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Job DescriptionP37388
Confidence100.00%DateThu Jan 5 11:55:35 GMT 2012
Rank10Aligned Residues309
% Identity26%Templatec2yyzA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein
Resolution2.11 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  YLLEMKNITKTFGSVKAIDNVCLRLNAGEIVSLCGENGSGKSTLMKVLCGIYPHGSYEGEIIFAGEEIQASHIRDTERKG
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Template Sequence  PSIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS. . GEIYFDDVLVNDIPPK. . . YRE
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TT
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STTSSTSS

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   2.......10.........20.........30.........40.........50....... ..60.........70... ...
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  IAIIHQELALVKELTVLENIFLGNEITHNGIMDYDLMTLRCQKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQVR
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Template Sequence  VGMVFQNYALYPHMTVFENIAFPLR. . . ARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPK
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TTS
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STTTT
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   77..80.........90.........100. ........110.........120.........130.........140.........150...
 
   163......170.........180........ .190.........200.........210.........220.........230.. ......
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Query Sequence  LLILDEPTASLTEQETSILLDIIRDL. QQHGIACIYISHKLNEVKAISDTICVIRDGQHIGTRDAAGMSED. . . DIITMM
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Template Sequence  VLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASF
Template Known Secondary structure  STTTTS


S

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   154.....160.........170.........180.........190.........200.........210.........220.........230...
 
   239240.........250...... ...260.........270.........280.........290..
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Query Sequence  VGRELTALYPNEPHTTGD. . . . . . . . . . . . . . . . . . . . . . . . . . EILRIEHLTAWHPVNRHIKRVNDVSFSLKRGEILGI
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Template Sequence  IGNPPTNFLRDFSVSVENKQTILKRDDVIIKLPEPVDVKLKEVVVGIRPEHCRISRERVENSIPGV. VYVVEPLGRDIIV
Template Known Secondary structure  SSSS

TTTT
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GGGSS

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   234.....240.........250.........260.........270.........280.........290......... 300.........310..
 
   293......300.........310.........320.
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Query Sequence  AGLVGAGRTETIQCLFGVWPGQWEGKIYI
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Template Sequence  NVKTEKGEIIKVFGDTGKAPQP. GENVFL
Template Known Secondary structure  TTS


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   313......320.........330.... .....340
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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