Job Description P37388 Confidence 100.00% Date Thu Jan 5 11:55:35 GMT 2012 Rank 7 Aligned Residues 430 % Identity 19% Template c2vf7B_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans Resolution 2.30 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.										.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.
Query Sequence		G	E	N	G	S	G	K	S	T	L	M	K	V	L	C	G	I	.	.	.	.	.	.	.	.	.	Y	P	H	G	S	Y	E	G	E	I	I	F	A	G	E	E	I	Q	A	S	H	I	R	D	T	E	R	K	G	I	A	I	I	H	Q	E	L	A	L	V	K	E	L	T	V	L	E	N	I	F	L	G	N	E
Query Conservation																			.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.						.	.																						.														.
Template Conservation																																	.	.																						.														.
Template Sequence		T	E	S	A	S	M	K	K	R	V	Q	G	Y	M	I	S	E	E	C	P	L	C	H	G	K	R	L	R	Q	E	A	.	.	L	N	V	T	F	A	G	L	D	I	T	E	L	S	R	L	P	L	A	R	V	.	S	E	L	L	R	P	Y	A	E	E	R	E	P	.	G	H	A	E	R	V	K	N	R	P	E
Template Known Secondary structure													T	T							T	T	T	T	T	S		B					.	.		T		B	B	T	T	B						T	T	S	B					.										T		S	T	.	T
Template Predicted Secondary structure																																	.	.																						.														.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																														.																												.	.
Query SS confidence																														.																												.	.
Query Sequence		I	T	H	N	G	I	M	D	Y	D	L	M	T	L	R	C	Q	K	L	L	A	Q	V	S	L	S	I	S	.	P	D	T	R	V	G	D	L	G	L	G	Q	Q	Q	L	V	E	I	A	K	A	L	N	K	Q	V	R	.	.	L	L	I	L	D	E	P	T	A	S	L	T	E	Q	E	T	S	I	L	L	D	I
Query Conservation																														.																												.	.
Alig confidence																		.												.																												.	.
Template Conservation																		.
Template Sequence		Q	A	I	A	L	Q	R	M	A	A	D	L	V	K	R	L	.	D	V	L	L	H	L	G	L	G	Y	L	G	L	D	R	S	T	P	T	L	S	P	G	E	L	Q	R	L	R	L	A	T	Q	L	Y	S	N	L	F	G	V	V	Y	V	L	D	E	P	S	A	G	L	H	P	A	D	T	E	A	L	L	S	A
Template Known Secondary structure																		.						T	T		T	T	S	B	S	S		B	G	G	G	S														T	T	S				S								T	T	T	T			T	T	S
Template Predicted Secondary structure																		.
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.							.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.
Query Sequence		I	R	D	L	Q	Q	H	G	I	A	C	I	Y	I	S	H	K	L	N	E	V	K	A	I	S	D	T	I	C	V	I	.	.	.	.	.	.	R	D	G	Q	H	I	G	T	R	D	A	A	G	M	S	E	D	D	I	I	T	M	M	V	G	R	E	L	T	A	L	Y	P	N	E	P	H	T	T	G	D	E	I
Query Conservation																																	.	.	.	.	.	.
Alig confidence																								.									.	.	.	.	.	.
Template Conservation																								.
Template Sequence		L	E	N	L	K	R	G	G	N	S	L	F	V	V	E	H	D	L	D	V	I	R	.	R	A	D	W	L	V	D	V	G	P	E	A	G	E	K	G	G	E	I	L	Y	S	G	P	P	E	G	L	K	H	V	P	E	S	Q	T	G	Q	Y	L	F	A	D	R	H	T	E	P	H	T	P	R	E	P	A	G	W
Template Known Secondary structure							T	T	T															.			S							S	S	S	G	G	G			S							G	G	G	G	G	S		T	T									T													S
Template Predicted Secondary structure																								.
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.		.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	I	E	H	L	T	A	W	H	P	V	N	R	H	I	K	R	V	N	D	V	S	F	S	L	K	R	G	E	I	L	G	I	A	G	L	V	G	A	G	R	T	E	T	I	Q	C	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.
Template Sequence		L	E	L	N	G	V	T	R	N	N	.	.	.	.	.	.	.	.	L	D	N	L	D	V	R	F	P	L	G	V	M	T	S	V	T	G	V	S	G	S	G	K	S	T	L	V	S	Q	A	L	V	D	A	L	A	A	H	F	G	Q	G	S	A	R	L	G	G	D	L	A	Q	I	T	R	L	V	R	V	D	Q
Template Known Secondary structure										T	T	.	.	.	.	.	.	.	.											S	S							S	T	T	S	S						T	T										S									S	S	G	G	G									S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.
Template SS confidence
		503	.	.	.	.	.	.	510	.	.									.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
																																																		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	W	P	G	Q	W	E	G	K	I	Y	I	D	G	K	Q	V	D	I	R	N	C	Q	Q	A	I	A	Q	G	I	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		K	P	I	G	R	T	P	R	S	N	M	A	T	Y	T	G	L	F	D	Q	V	R	K	L	F	A	A	T	P	L	A	K	K	R	G	Y	N	A	G	R	F	S	F	N	V	K	G	G	R	C	E	H	C	Q	G	E	G	W	V	M	V	P	S	V	Y	A	P	C	P	V	C	H	G	.	.	.	.	.	.	.
Template Known Secondary structure		S		S		S	S	T	T								T	T								T	T	S	S	T					S				T	T	S	S		S	S	S	S	S	S	B		S	S	S	T	T														T	T	T	S	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	P	E	D	R	K	R	D	G	I	V	P	V	M	A	V	G	K	N	I	T	L	A	A	L	N	K	F	T	G	G	I	S	Q	L	D	D	A	A	E	Q	K	C	I	L	E	S	I	Q	Q	L	K	V	K	T	S	S	P	D	L	A	I	G	R	L	S	G	G	N	Q	Q	K	A	I	L	A	R	C	L
Query Conservation
Alig confidence																													.	.	.	.
Template Conservation																													.	.	.	.
Template Sequence		T	R	Y	N	A	E	T	L	E	V	E	Y	R	G	K	N	I	A	D	V	L	A	L	T	V	D	E	.	.	.	.	A	H	D	F	F	A	D	E	S	A	I	F	R	A	L	D	T	L	R	E	V	G	L	G	Y	L	R	L	G	Q	P	A	T	E	L	S	G	G	E	A	Q	R	I	K	L	A	T	E	L
Template Known Secondary structure		S		B		T	T	G	G	G			S	S	S								T		B				.	.	.	.					T	T	T															T		T	T	S	B	T	T			G	G	G			S
Template Predicted Secondary structure																													.	.	.	.
Template SS confidence
		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.					.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.
		421	.	.	.	.				.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.							.	480	.	.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure							.	.	.																																																						.	.	.	.	.	.
Query SS confidence							.	.	.																																																						.	.	.	.	.	.
Query Sequence		L	L	N	P	R	.	.	.	I	L	I	L	D	E	P	T	R	G	I	D	I	G	A	K	Y	E	I	Y	K	L	I	N	Q	L	V	Q	Q	G	I	A	V	I	V	I	S	S	E	L	P	E	V	L	G	L	S	D	R	V	L	V	M	.	.	.	.	.	.	H	E	G	K	L	K	A	N	L	I	N	H	N
Query Conservation							.	.	.																																																						.	.	.	.	.	.
Alig confidence							.	.	.																																												.										.	.	.	.	.	.
Template Conservation																																																					.
Template Sequence		R	R	S	G	R	G	G	T	V	Y	V	L	D	E	P	T	T	G	L	H	P	A	D	V	E	R	L	Q	R	Q	L	V	K	L	V	D	A	G	N	T	V	I	A	V	E	H	K	M	Q	V	V	.	A	A	S	D	W	V	L	D	I	G	P	G	A	G	E	D	G	G	R	L	V	A	Q	G	T	P	A	E
Template Known Secondary structure				S	S	S	S									S		S	S																			T	T														.	T	T		S							S	S	S	G	G	G			S						S
Template Predicted Secondary structure																																																					.
Template SS confidence
		746	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.
		492
Predicted Secondary structure
Query SS confidence
Query Sequence		L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		825