Job Description P37388 Confidence 99.96% Date Thu Jan 5 11:55:35 GMT 2012 Rank 60 Aligned Residues 374 % Identity 15% Template c1u9iA_ PDB info PDB header:circadian clock protein Chain: A: PDB Molecule:kaic; PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites Resolution 2.80 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	A	G	E	I	V	S	L	C	G	E	N	G	S	G	K	S	T	L	M	K	V	L	C	G	I	Y	P	H	G	S	Y	E	G	E	I	I	F	A	G	E	E	I	Q	A	S	H	I	R	D	T	E	R	K	G	I	A	I	I	H	Q	E	L	A	L	V	K	E	L	T	V	L	E	N	I	F	L	G	N
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	P	I	G	R	S	T	L	V	S	G	T	S	G	T	G	K	T	L	F	S	I	Q	F	L	Y	N	G	I	I	E	F	D	E	P	G	V	F	V	T	F	E	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	D	I	I	K	N	A
Template Known Secondary structure				T	T	S							S	T	T	S	S																									S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.																													80	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.					.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		E	I	T	H	N	G	I	M	D	Y	D	L	M	T	L	R	C	Q	K	L	L	A	Q	V	S	L	S	I	S	P	D	T	R	V	G	D	L	G	L	G	Q	Q	Q	L	V	E	I	A	K	A	L	N	K	Q	V	R	L	L	I	L	D	E	P	T	A	S	L	.	.	.	.	T	E	Q	E	T	S	I	L	L
Query Conservation																																																																					.	.	.	.
Alig confidence			.	.	.																																																																.	.	.	.
Template Conservation			.	.	.
Template Sequence		R	.	.	.	S	F	G	W	D	L	A	K	L	V	D	E	G	K	L	F	I	L	D	A	S	P	D	P	E	G	Q	E	V	V	G	G	F	D	L	S	A	L	I	E	R	I	N	Y	A	I	Q	K	Y	R	A	R	R	V	S	I	D	S	V	T	S	V	F	Q	Q	Y	D	A	S	S	V	V	R	R	E	L
Template Known Secondary structure		G	.	.	.	G	G	T									T	T	S										S	S			S			S	S																		T		S							S	T	T	T	S	T	T	T
Template Predicted Secondary structure			.	.	.
Template SS confidence
		88				.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		183	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.																												.	.
Query SS confidence							.																												.	.
Query Sequence		D	I	I	R	D	.	L	Q	Q	H	G	I	A	C	I	Y	I	S	H	K	L	N	E	V	K	A	I	S	D	T	I	C	V	.	.	I	R	D	G	Q	H	I	G	T	R	D	A	A	G	M	S	E	D	D	I	I	T	M	M	V	G	R	E	L	T	A	L	Y	P	N	E	P	H	T	T	G	D	E	I	L
Query Conservation							.																												.	.
Alig confidence							.																												.	.
Template Conservation
Template Sequence		F	R	L	V	A	R	L	K	Q	I	G	A	T	T	V	M	T	T	E	R	I	E	E	Y	G	P	I	A	R	Y	G	V	E	E	F	V	S	D	N	V	V	I	L	R	N	V	L	E	G	E	R	R	R	R	T	L	E	I	L	K	L	R	G	T	S	H	M	K	G	E	Y	P	F	T	I	T	D	H	G	I
Template Known Secondary structure												T										S	S	S	S	S		S	S	T	T	S							S										S	T	T												T	T	S					S								T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.												.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	I	E	H	L	T	A	W	H	P	V	N	R	H	I	K	R	V	N	D	V	S	F	S	.	.	.	.	.	.	.	.	.	.	.	L	K	R	G	E	I	L	G	I	A	G	L	V	G	A	G	R	T	E	T	I	Q	C	L	F	G	V	W	P	G	Q	W	E	G	K	I	Y	I	D	G	K	Q	V	D	I
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.								.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.
Template Conservation																	.	.																																																									.	.	.	.	.	.	.
Template Sequence		N	I	F	P	L	G	A	M	R	L	T	Q	R	S	S	.	.	N	V	R	V	S	S	G	V	V	R	L	D	E	M	C	G	G	G	F	F	K	D	S	I	I	L	A	T	G	A	T	G	T	G	K	T	L	L	V	S	R	F	V	E	N	A	C	A	N	K	E	R	A	I	L	F	.	.	.	.	.	.	.
Template Known Secondary structure						T	T	T			S						.	.							S								T	T	S	S			S	S									T	T	S	S														T	T	T							.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.																																																									.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	C	Q	Q	A	I	A	Q	G	I	A	M	V	P	E	D	R	K	R	D	G	I	V	P	V	M	A	V	G	K	N	I	T	L	A	A	L	N	K	F	T	G	G	I	S	Q	L	D	D	A	A	E	Q	K	C	I	L	E	S	I	Q	Q	L	K	V	K	T	S	S	P	D	L	A	I	G	R	L	S	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	E	E	S	R	A	Q	L	L	R	N	A	Y	S	W	G	M	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	E	M	E	R	Q	N	L	.	L	K	I	V	C	A	Y	P	E	S	A	G	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S											T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S	.								G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
																									316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.																.	.	.	.	.	340	.	.	.		.	.	.	.	.	.	350	.	.	.	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.					.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.									.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.																															.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.																															.	.	.	.	.	.	.	.
Query Sequence		G	N	Q	Q	K	A	I	L	A	R	C	L	L	L	N	P	R	I	L	I	L	D	E	P	T	.	.	.	.	R	G	I	D	I	G	A	K	Y	E	I	Y	K	L	I	N	Q	L	V	Q	Q	G	I	A	V	I	V	I	S	S	.	.	.	.	.	.	.	.	E	L	P	E	V	L	G	L	S	D	R	V	L
Query Conservation																											.	.	.	.																															.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	D	H	L	Q	I	I	K	S	E	I	N	D	F	K	P	A	R	I	A	I	D	S	L	S	A	L	A	R	G	V	S	N	N	A	F	R	Q	F	V	I	G	V	T	G	Y	A	K	Q	E	E	I	T	G	L	F	T	N	T	S	D	Q	F	M	G	A	H	S	I	T	D	S	H	I	I	T	D	T	I	I
Template Known Secondary structure														T	T			S											T	S	S	S																			T	T										S	S	S	S				S	S		S	S					S
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		477	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		439	440	.