Job Description P37388 Confidence 100.00% Date Thu Jan 5 11:55:35 GMT 2012 Rank 15 Aligned Residues 309 % Identity 21% Template c1q1bD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk; PDBTitle: crystal structure of e. coli malk in the nucleotide-free form Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	M	K	N	I	T	K	T	F	G	S	V	K	A	I	D	N	V	C	L	R	L	N	A	G	E	I	V	S	L	C	G	E	N	G	S	G	K	S	T	L	M	K	V	L	C	G	I	Y	P	H	G	S	Y	E	G	E	I	I	F	A	G	E	E	I	Q	A	S	H	I	R	D	T	E	R	K	G	I	A
Query Conservation
Alig confidence																																																								.	.																	.	.	.
Template Conservation																																																								.	.																	.	.	.
Template Sequence		V	Q	L	Q	N	V	T	K	A	W	G	E	V	V	V	S	K	D	I	N	L	D	I	H	E	G	E	F	V	V	F	V	G	P	S	G	C	G	K	S	T	L	L	R	M	I	A	G	L	E	T	I	T	S	.	.	G	D	L	F	I	G	E	K	R	M	N	D	T	P	P	A	.	.	.	E	R	G	V	G
Template Known Secondary structure												T	T													T	T								S	G	G	G	S								T	T	T	S	S				S	.	.	S					T	T				T	T			S	S	.	.	.	T	T
Template Predicted Secondary structure																																																								.	.																	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	H	Q	E	L	A	L	V	K	E	L	T	V	L	E	N	I	F	L	G	N	E	I	T	H	N	G	I	M	D	Y	D	L	M	T	L	R	C	Q	K	L	L	A	Q	V	S	L	S	I	S	P	D	T	R	V	G	D	L	G	L	G	Q	Q	Q	L	V	E	I	A	K	A	L	N	K	Q	V	R	L	L
Query Conservation
Alig confidence																									.	.	.
Template Conservation																									.	.	.
Template Sequence		M	V	F	Q	S	Y	A	L	Y	P	H	L	S	V	A	E	N	M	S	F	G	L	K	.	.	.	L	A	G	A	K	K	E	V	I	N	Q	R	V	N	Q	V	A	E	V	L	Q	L	A	H	L	L	D	R	K	P	K	A	L	S	G	G	Q	R	Q	R	V	A	I	G	R	T	L	V	A	E	P	S	V	F
Template Known Secondary structure			B		S						T	T	S						T	T	T	T	T	T	.	.	.	S	S	S	S	T	T	T	T	T	T	T					T	T	G	G	G	T		T	T		S	S					G	G	G	T	T	T	S	S	S	S	T	T					T	T			S
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.				.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																										.																																																	.	.	.	.	.	.	.
Query SS confidence																										.																																																	.	.	.	.	.	.	.
Query Sequence		I	L	D	E	P	T	A	S	L	T	E	Q	E	T	S	I	L	L	D	I	I	R	D	L	.	Q	Q	H	G	I	A	C	I	Y	I	S	H	K	L	N	E	V	K	A	I	S	D	T	I	C	V	I	R	D	G	Q	H	I	G	T	R	D	A	A	G	M	S	E	D	D	I	I	T	.	.	.	.	.	.	.
Query Conservation																										.																																																	.	.	.	.	.	.	.
Alig confidence																										.																																																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	D	E	P	L	S	N	L	D	A	A	L	R	V	Q	M	R	I	E	I	S	R	L	H	K	R	L	G	R	T	M	I	Y	V	T	H	D	Q	V	E	A	M	T	L	A	D	K	I	V	V	L	D	A	G	R	V	A	Q	V	G	K	P	L	E	L	Y	H	Y	P	A	D	R	F	V	A	G	F	I	G
Template Known Secondary structure			B	S	S	T	T	T	T			T	T	T															T	T								S										S							T	T														S		S	B							S	S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
																											237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	M	V	G	R	E	L	T	A	L	Y	P	N	E	P	H	T	T	G	D	E	I	L	R	I	E	H	L	T	A	W	H	P	V	N	R	H	I	K	R	V	N	D	V	S	F	S	L	K	R	G	E	I	L	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	P	K	M	N	F	L	P	V	K	V	T	A	T	A	I	D	Q	V	Q	V	E	L	P	M	P	N	R	Q	Q	V	W	L	P	V	E	S	R	D	V	Q	V	G	A	N	M	S	L	G	I	R	P	E	H	L	L	P	S	D	I	A	D	V	I	L	E	G	E	V	Q	V	V	E	Q	L	G	N	E	T	Q
Template Known Secondary structure		S	S														T	T							S	S	T	T								B			T	T			T	T									G	G	G		B		S		S		S	S													S	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	G	L	V	G	A	G	R	T	E	T	I	Q	C	L	F	G	V	W	P	G	Q	W	E	G	K	I	Y	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	H	I	Q	I	P	S	I	R	Q	N	L	V	Y	R	Q	N	D	V	V	L	V	E	E	G	A	T	F	A	I
Template Known Secondary structure							T	T		S	S								S						T	T
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions