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Job DescriptionP30750
Confidence100.00%DateThu Jan 5 11:46:26 GMT 2012
Rank2Aligned Residues241
% Identity34%Templatec2yyzA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein
Resolution2.11 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA
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Template Sequence  SIRVVNLKKYFGKV. . . . KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY. . . .
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STTSSTSS

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   3......10...... ...20.........30.........40.........50.........60.........70....
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK
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Template Sequence  . REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPK
Template Known Secondary structure  .TT
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TTS
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STTTT
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   75....80.........90.........100.........110.........120.........130.........140.........150...
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKF
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Template Sequence  VLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASF
Template Known Secondary structure  STTTTS


S

STT
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   154.....160.........170.........180.........190.........200.........210.........220.........230...
 
   241........250
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Query Sequence  IQSTLHLDIP
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Template Sequence  IGNPPTNFLR
Template Known Secondary structure  SSSS

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   234.....240...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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