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Job DescriptionP30750
Confidence100.00%DateThu Jan 5 11:46:26 GMT 2012
Rank8Aligned Residues236
% Identity36%Templatec1z47B_
PDB info PDB header:ligand binding proteinChain: B: PDB Molecule:putative abc-transporter atp-binding protein; PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR
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Template Sequence  IEFVGVEKIYPGGA. . . RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK. . . . .
Template Known Secondary structure 

TTST...T

TT

STTSSTSS

STT
TT

GGG.....
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   15....20........ .30.........40.........50.........60.........70.........80......
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV
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Template Sequence  RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQV
Template Known Secondary structure  SSTT



TTS
TTGGGTT

TT
GGGTTS
GGGS
TT

S
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   87..90.........100.........110.........120.........130.........140.........150.........160......
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  LLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFI
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Template Sequence  LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASFI
Template Known Secondary structure  STTTTS


S

STT
S
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   167..170.........180.........190.........200.........210.........220.........230.........240......
 
   242...
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Query Sequence  QSTL
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Template Sequence  GESN
Template Known Secondary structure  S

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   247..250
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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