 |
Job Description | P08179 | Confidence | 77.30% | Date | Thu Jan 5 11:00:44 GMT 2012 |
Rank | 69 | Aligned Residues | 74 |
% Identity | 12% | Template | c1h6dL_ |
PDB info |
PDB header:protein translocation | Chain: L: PDB Molecule:precursor form of glucose-fructose |
PDBTitle: oxidized precursor form of glucose-fructose oxidoreductase2 from zymomonas mobilis complexed with glycerol
|
Resolution | 2.05 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | N | I | V | V | L | I | S | G | N | G | S | N | L | Q | A | I | I | D | A | C | K | T | N | K | I | K | G | T | V | R | A | V | F | S | N | K | A | D | A | F | G | L | E | R | A | R | Q | A | G | I | A | T | H | T | L | I | A | S | A | F | D | S | R | E | A | Y | D | R | E | L | I | H | E | I | D | M | Y | A | P |
Query Conservation |   |
|
|
|
|
|   |   |
|
|   |
|
|   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|
| . | . |
|   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|   |
| . |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |
|
Template Sequence |   |
F | G | Y | A | I | V | . |
. |
G | L | G | K | Y | A | L | N | Q | I | L | P | G | F | A | G | C | Q | H | S | R | I | E | A | L | V | S | . |
G | N | A | E | K | A | K | I | V | A | A | E | Y | G | V | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
P | R | K | I | Y | D | Y | S | N | F | D | K | I | A | K | D | P | K | I |
Template Known Secondary structure |   |
 |  |  |  |  |  | . | . |
|
| S |  |  |  |  |  | T |  |  |  |  | T | T | T |
| S | S |  |  |  |  |  |  |  |
| . | S |
|  |  |  |  |  |  |  |  |  |  | T | T |
|
| . | . | . | . | . | . | . | . | . | G | G | G |  |  |
| S | S | G | G | G | G | G | G | G |
| T | T |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |
|
|  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
84 | . | . | . | . | . | |
|
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | |
. | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . |
  |
  |   |
81 | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
Query Sequence |   |
D | V | V | V | L | A |
Query Conservation |   |
|
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |
Template Sequence |   |
D | A | V | Y | I | I |
Template Known Secondary structure |   |
|  |  |  |  |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
  |   |
152 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|