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Job DescriptionP07821
Confidence100.00%DateThu Jan 5 11:00:34 GMT 2012
Rank18Aligned Residues240
% Identity24%Templatec3g5uB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding
Resolution3.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20. ........30.........40.........50.........60.........70........
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Query Sequence  QEYTNHSDTTFALRNISFRV. . . PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESW
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Template Sequence  GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQL
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   1021........1030.........1040.........1050.........1060.........1070.........1080.........1090.........1100
 
   7980.........90.........100.........110.........120... ......130..... ....140.........150.....
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Query Sequence  SSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAA. DREKVEEAISLV. . GLKPLAHRLVDSLSGGERQR
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Template Sequence  NVQWLRAQLGIVSQEPILFDC. SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQR
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   1101........1110.........1120. ........1130.........1140.........1150.........1160.........1170.........
 
   156...160.........170.........180.........190.........200.........210.........220.........230.....
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Query Sequence  AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLSLVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEI
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Template Sequence  IAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE. . GRTCIVIAHRLSTIQ. NADLIVVIQNGKVKEHGTHQQL
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   1180.........1190.........1200.........1210......... 1220.........1230.... .....1240.........1250......
 
   236 ...240.....
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Query Sequence  M. RGETLEMIY
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Template Sequence  LAQKGIYFSMV
Template Known Secondary structure  S
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   1257..1260.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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