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Job DescriptionP39836
Confidence4.86%DateThu Jan 5 12:01:05 GMT 2012
Rank4Aligned Residues206
% Identity16%Templated2nwwa1
SCOP infoProton glutamate symport protein Proton glutamate symport protein Proton glutamate symport protein
Resolution3.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20....... .. 30.........40.........50.........60.........70...
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Query Sequence  DPFTLTLITVVLLASFFPAR. . . . . . . . . . . . . GD. FVPFFENLTTAAIALLFFMHGAKLSREAIIAGGGHWRLHLWVMC
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Template Sequence  QKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVK. . . IVVYYL
Template Known Secondary structure  STTTTTTTTTTT
S
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   14.....20.........30.........40.........50.........60.........70.........80.... .....90
 
   74.....80.........90... ......100.........110.........120.........130.........140
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Query Sequence  STFVLFPILGVLFAWWKPVN. . . . . . . . . . . . . VDPMLYSGFLYLCILPATVQSAIAFTSMAGGNVAAAVCSASASSLLG
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Template Sequence  LTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVP. . . . TNP. FGALANGQVLP. . . . . . . . . . . .
Template Known Secondary structure  S
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GGGS
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   91........100.........110.........120.........130......... 140.. .......150...
 
   141........150.........160.........170.........180 .........190.........200......
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Query Sequence  IFLSPLLVGLVMNVHGAGGSLEQVGKIMLQLLLPFVLGHL. . . . . . . . . . . . . . SRPWIGDWVSRNKKWIAKTDQTSILL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . TIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIG
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   154.....160.........170.........180.........190.........200........
 
   207..210.........220.........230.........240.........250.........260
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Query Sequence  VVYTAFSEAVVNGIWHKVGWGSLLFIVVVSCVLLAIVIVVNVFMARRLSFNKAD
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Template Sequence  VFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYF. . VLLKIYGIDPIS
Template Known Secondary structure  TGGG

TT..TTT

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   209210.........220.........230.........240........ .250.........260
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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