Job Description P39836 Confidence 0.88% Date Thu Jan 5 12:01:05 GMT 2012 Rank 30 Aligned Residues 318 % Identity 11% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		T	L	T	L	I	T	V	V	L	L	A	S	F	F	P	A	R	G	D	F	V	P	F	F	E	N	L	T	T	A	A	.	.	I	A	L	L	F	F	M	H	G	A	K	L	S	R	E	A	I	I	A	G	G	G	H	W	R	L	H	L	W	V	M	C	S	T	F	V	L	F	P	I	L	G	V	L	F	A	W
Query Conservation																																	.	.
Alig confidence																																	.	.
Template Conservation
Template Sequence		V	P	I	I	A	V	L	F	Q	T	Q	F	I	I	R	F	M	D	V	E	E	A	M	A	T	K	T	V	G	Y	M	H	A	V	I	F	A	V	P	A	Y	L	L	F	Q	A	L	R	S	F	T	D	G	M	S	L	T	K	P	A	M	V	I	G	F	I	G	L	L	L	N	I	P	L	N	W	I	F	V	Y
Template Known Secondary structure																S	S		S	S	T	T																											T	T	T	T		T	T	S																									T
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.																					.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	K	P	V	N	V	D	P	M	L	Y	S	G	F	L	Y	L	C	I	L	P	A	T	V	Q	S	A	I	A	F	T	S	M	A	G	G	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	A	V	C	S	A	S	A	S	S	L	L	G	I	F	L	S	P	L	L	V
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.
Template Sequence		G	K	F	G	A	.	P	E	L	G	G	V	G	C	G	V	A	T	A	I	V	Y	W	I	M	L	L	L	L	L	F	Y	I	V	T	S	K	R	L	A	H	V	K	V	F	E	T	F	H	K	P	Q	P	K	E	L	I	R	L	F	R	L	G	F	P	V	A	A	A	L	F	F	E	V	T	L	F	A	V	V
Template Known Secondary structure		T		S	S		.																													T		T	T												S	S	T	T	T	S	T	T	T	T
Template Predicted Secondary structure							.
Template SS confidence
		184	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		149	150	.	.	.	.	.	.	.	.						.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure												.	.	.	.	.																					.	.	.
Query SS confidence												.	.	.	.	.																					.	.	.
Query Sequence		G	L	V	M	N	V	H	G	A	G	.	.	.	.	.	G	S	L	E	Q	V	G	K	I	M	L	Q	L	L	L	P	F	V	L	G	.	.	.	H	L	S	R	P	W	I	G	D	W	V	S	R	N	K	K	W	I	A	K	T	D	Q	T	S	I	L	L	V	V	Y	T	A	F	S	E	A	V	V	N	G	I
Query Conservation												.	.	.	.	.																					.	.	.
Alig confidence												.	.	.	.	.																					.	.	.
Template Conservation
Template Sequence		A	L	L	V	A	P	L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	E	Q	D	T	K	G	A	A	I	A	A	N	V	G	L	M	T	G	L	A	T	A	C	I	T	A	L	L	T	V	L	F	R	E	Q
Template Known Secondary structure					T			S		S	T					T	T																											G	G	G	S	S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		221	.	.						.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.						.	.	.	.	.	.	290
Predicted Secondary structure					.	.	.	.	.																																																													.	.	.	.	.
Query SS confidence					.	.	.	.	.																																																													.	.	.	.	.
Query Sequence		W	H	K	.	.	.	.	.	V	G	W	G	S	L	L	F	I	V	V	V	S	C	V	L	L	A	I	V	I	V	V	N	V	F	M	A	R	R	L	S	F	N	K	A	D	E	I	T	I	V	F	C	G	S	K	K	S	L	A	N	G	I	P	M	A	N	I	L	.	.	.	.	.	F	P	T	S	V	I	G
Query Conservation					.	.	.	.	.																																																													.	.	.	.	.
Alig confidence					.	.	.	.	.																																.																													.	.	.	.	.
Template Conservation																																									.
Template Sequence		I	A	L	L	Y	T	E	N	Q	V	V	V	A	L	A	M	Q	L	L	L	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	A	G	S	L	.	R	G	Y	K	D	M	T	A	I	F	H	R	T	F	I	S	Y	W	V	L	G	L	P	T	G	Y	I	L	G	M	T	N	W	L	T	E	Q	P	L	G
Template Known Secondary structure					T	S	S		S	S	T	T																													.	G	G	G	S	S																												S	S	S			S
Template Predicted Secondary structure																																									.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	V	L	P	L	M	I	F	H	Q	I	Q	L	M	V	C	A	V	L	A	R	R	Y	K	R	Q	T	E	Q	L	Q	A	Q	Q	E	S	S	A	D	K
Query Conservation
Alig confidence											.
Template Conservation											.
Template Sequence		A	K	G	F	W	L	G	F	I	.	I	G	L	S	A	A	A	L	M	L	G	Q	R	L	Y	W	L	Q	K	Q	S	D	D	V	Q	L	H	L	A	A	K
Template Known Secondary structure											.										T	G	G	G	S	T	T	T			S	S		T	T	T	T	T	S	S
Template Predicted Secondary structure											.
Template SS confidence
		422	.	.	.	.	.	.	.	430		.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions