Job Description Q47155 Confidence 100.00% Date Thu Jan 5 12:36:31 GMT 2012 Rank 7 Aligned Residues 340 % Identity 31% Template c3mr2A_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm) Resolution 1.83 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																							.																																					.	.	.	.	.	.
Query SS confidence																																							.																																					.	.	.	.	.	.
Query Sequence		R	K	I	I	H	V	D	M	D	C	F	F	A	A	V	E	M	R	D	N	P	A	L	R	D	I	P	I	A	I	G	G	S	R	E	R	R	.	G	V	I	S	T	A	N	Y	P	A	R	K	F	G	V	R	S	A	M	P	T	G	M	A	L	K	L	C	P	H	L	T	L	L	P	G	.	.	.	.	.	.
Query Conservation																																							.																																					.	.	.	.	.	.
Alig confidence																																							.																																					.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	V	A	L	V	D	M	D	C	F	F	V	Q	V	E	Q	R	Q	N	P	H	L	R	N	K	P	C	A	V	V	Q	Y	K	S	W	K	G	G	G	I	I	A	V	S	Y	E	A	R	A	F	G	V	T	R	S	M	W	A	D	D	A	K	K	L	C	P	D	L	L	L	A	Q	V	R	E	S	R	G	K
Template Known Secondary structure										T	T											G	G	G	T	T	S								T	T	T	T	T												T	T	T			T	T		B									T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
			75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure		.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	R	F	D	A	Y	K	E	A	S	N	H	I	R	E	I	F	S	R	Y	T	S	R	I	E	P	L	S	L	D	E	A	Y	L	D	V	T	D	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																						.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.
Template Sequence		A	N	L	T	K	Y	R	E	A	S	V	E	V	M	E	I	M	S	R	F	A	V	.	I	E	R	A	S	I	D	E	A	Y	V	D	L	T	S	A	V	Q	E	R	L	Q	K	L	Q	G	Q	P	I	S	A	D	L	L	P	S	T	Y	I	E	G	L	P	Q	G	P	E	E	T	V	Q	K	E	G	M	R	K
Template Known Secondary structure																				T	T	S		.						T	T																	S	S	S					G	G	G		T	T				T	T		S					G	G	G	S
Template Predicted Secondary structure																								.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
																					114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	C	H	G	S	A	T	L	I	A	Q	E	I	R	Q	T	I	F	N	E	L	Q	L	T	A	S	A	G	V	A	P	V	K	F	L	A	K	I	A	S	D	M	N	K	P	N	G	Q	F	V	I	T	P	A	E	V	P	A	F	L	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	G	L	F	Q	W	L	D	S	L	Q	I	D	N	L	T	S	P	D	L	Q	L	T	V	G	A	V	I	V	E	E	M	R	A	A	I	E	R	E	T	G	F	Q	C	S	A	G	I	S	H	N	K	V	L	A	K	L	A	C	G	L	N	K	P	N	R	Q	T	L	V	S	H	G	S	V	P	Q	L	F	S
Template Known Secondary structure													S	S		T	T																									S									S	S											T		S	S							G	G	G
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.			250
Predicted Secondary structure																			.																										.																																		.	.
Query SS confidence																			.																										.																																		.	.
Query Sequence		T	L	P	L	A	K	I	P	G	V	G	K	V	S	A	A	K	.	L	E	A	M	G	L	R	T	C	G	D	V	Q	K	C	D	L	V	M	L	L	K	R	F	G	.	K	F	G	R	I	L	W	E	R	S	Q	G	I	D	E	R	D	V	N	S	E	R	L	R	K	S	V	G	V	E	R	T	M	.	.	A
Query Conservation																			.																										.																																		.	.
Alig confidence																			.																										.																																		.	.
Template Conservation
Template Sequence		Q	M	P	I	R	K	I	R	S	L	G	G	K	L	G	A	S	V	I	E	I	L	G	I	E	Y	M	G	E	L	T	Q	F	T	E	S	Q	L	Q	S	H	F	G	E	K	N	G	S	W	L	Y	A	M	C	R	G	I	E	H	D	P	V	K	P	R	Q	L	P	K	T	I	G	C	S	K	N	F	P	G	K
Template Known Secondary structure		T		B	G	G	G	S	T	T		S	S											T			B	G	G	G	G	G	G	S																					T	T	T									B		S		S										G	G
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.				.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																															.	.																	.	.	.
Query SS confidence																															.	.																	.	.	.
Query Sequence		E	D	I	H	H	W	S	E	C	E	A	I	I	E	R	L	Y	P	E	L	E	R	R	L	A	K	V	K	P	.	.	D	L	L	I	A	R	Q	G	V	K	L	K	F	D	D	F	.	.	.	Q	Q	T	T	Q	E	H	V	W	P	R	L	N	K	A	D	L	I	A	T	A	R	K	T	W	D	E	R	R	G
Query Conservation																															.	.																	.	.	.
Alig confidence																															.	.																	.	.	.
Template Conservation
Template Sequence		T	A	L	A	T	R	E	Q	V	Q	W	W	L	L	Q	L	A	Q	E	L	E	E	R	L	T	K	D	R	N	D	N	D	R	V	A	T	Q	L	V	V	S	I	R	V	Q	G	D	K	R	L	S	S	L	R	R	C	C	A	L	T	R	Y	D	A	H	K	M	S	H	D	A	F	T	V	I	K	N	C	N	T
Template Known Secondary structure		G	S																														S													T	T			S	S		S																								G	G	G
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		326	.	.						.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure					.	.	.	.	.
Query SS confidence					.	.	.	.	.
Query Sequence		G	R	G	.	.	.	.	.	V	R	L	V	G	L	H	V	T	L	L	D	P	Q
Query Conservation					.	.	.	.	.
Alig confidence					.	.	.	.	.
Template Conservation
Template Sequence		S	G	T	E	W	S	P	P	L	T	M	L	F	L	C	A	T	K	F	S	A	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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