Job Description Q47155 Confidence 100.00% Date Thu Jan 5 12:36:31 GMT 2012 Rank 5 Aligned Residues 328 % Identity 38% Template c1t94B_ PDB info PDB header:replication Chain: B: PDB Molecule:polymerase (dna directed) kappa; PDBTitle: crystal structure of the catalytic core of human dna2 polymerase kappa Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	I	I	H	V	D	M	D	C	F	F	A	A	V	E	M	R	D	N	P	A	L	R	D	I	P	I	A	I	G	G	S	R	E	R	R	G	V	I	S	T	A	N	Y	P	A	R	K	F	G	V	R	S	A	M	P	T	G	M	A	L	K	L	C	P	H	L	T	L	L	P	G	R	F	D	A	Y	K	E
Query Conservation
Alig confidence																																			.	.	.	.
Template Conservation																																			.	.	.	.
Template Sequence		N	T	I	V	H	I	D	M	D	A	F	Y	A	A	V	E	M	R	D	N	P	E	L	K	D	K	P	I	A	V	G	S	M	.	.	.	.	S	M	L	S	T	S	N	Y	H	A	R	R	F	G	V	R	A	A	M	P	G	F	I	A	K	R	L	C	P	Q	L	I	I	V	P	P	N	F	D	K	Y	R	A
Template Known Secondary structure										T	T											G	G	G	T	T	S							T	.	.	.	.	T											T	T	T			S	S	S										T	T
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.																					.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	N	H	I	R	E	I	F	S	R	Y	T	S	R	I	E	P	L	S	L	D	E	A	Y	L	D	V	T	D	S	V	H	C	H	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	L	I	A	Q	E	I	R	Q	T	I	F	N	E	L	Q	L	T	A	S	A	G
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	K	E	V	K	E	I	L	A	D	Y	D	P	N	F	M	A	M	S	L	D	E	A	Y	L	N	I	T	K	H	L	E	E	R	Q	N	W	P	E	D	K	R	R	Y	F	I	K	Q	N	S	V	V	F	G	T	S	A	Q	E	V	V	K	E	I	R	F	R	I	E	Q	K	T	T	L	T	A	S	A	G
Template Known Secondary structure											T	T	T		T	T					S	S	S														T	T			G	G	G	G													S	S																S	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		V	A	P	V	K	F	L	A	K	I	A	S	D	M	N	K	P	N	G	Q	F	V	I	T	P	.	.	A	E	V	P	A	F	L	Q	T	L	P	L	A	K	I	P	G	V	G	K	V	S	A	A	K	L	E	A	M	G	L	R	T	C	G	D	V	Q	K	C	D	L	V	M	L	L	K	R	F	G	K	F	G
Query Conservation																											.	.
Alig confidence																											.	.
Template Conservation
Template Sequence		I	A	P	N	T	M	L	A	K	V	C	S	D	K	N	K	P	N	G	Q	Y	Q	I	L	P	N	R	Q	A	V	M	D	F	I	K	D	L	P	I	R	K	V	S	G	I	G	K	V	T	E	K	M	L	K	A	L	G	I	I	T	C	T	E	L	Y	Q	Q	R	A	L	L	S	L	L	F	S	E	T	S	W
Template Known Secondary structure				S	S								T	T	T	T		S	S							S	S										T		B	G	G	G		T	T	S									G	G	G	T			B							T								S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	L	W	E	R	S	Q	G	I	D	E	R	D	V	N	S	E	R	L	R	K	S	V	G	V	E	R	T	M	A	E	D	I	H	H	W	S	E	C	E	A	I	I	E	R	L	Y	P	E	L	E	R	R	L	A	K	V	K	P	D	L	L	I	A	R	Q	G	V	K	L	K	F	D	D	F	Q	Q	T	T
Query Conservation
Alig confidence																			.	.	.												.																													.	.
Template Conservation																			.	.	.												.																													.	.
Template Sequence		H	Y	F	L	H	I	S	L	G	L	G	S	T	H	L	T	R	.	.	.	R	K	S	M	S	V	E	R	T	F	S	.	E	I	N	K	A	E	E	Q	Y	S	L	C	Q	E	L	C	S	E	L	A	Q	D	L	Q	K	E	R	L	.	.	K	G	R	T	V	T	I	K	L	K	N	V	N	F	E	V	K	T
Template Known Secondary structure									T	T				S	S				.	.	.												.																								T	T	S			.	.			S									T	T	S
Template Predicted Secondary structure																			.	.	.												.																													.	.
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.				410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.			.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.						.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.
Query SS confidence																														.	.	.	.	.
Query Sequence		Q	E	H	V	W	P	R	L	N	K	A	D	L	I	A	T	A	R	K	T	W	D	E	R	R	G	G	R	.	.	.	.	.	G	V	R	L	V	G	L	H	V	T	L	L
Query Conservation																														.	.	.	.	.
Alig confidence																														.	.	.	.	.
Template Conservation
Template Sequence		R	A	S	T	S	V	V	S	T	A	E	E	I	F	A	I	A	K	E	L	L	K	T	E	I	D	A	D	F	P	H	P	L	R	L	R	L	M	G	V	R	I	S	S	F
Template Known Secondary structure										S	T	T	T	T	T	T	T												S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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