Job Description Q47155 Confidence 100.00% Date Thu Jan 5 12:36:31 GMT 2012 Rank 10 Aligned Residues 334 % Identity 29% Template c1t3nB_ PDB info PDB header:replication/dna Chain: B: PDB Molecule:polymerase (dna directed) iota; PDBTitle: structure of the catalytic core of dna polymerase iota in2 complex with dna and dttp Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		R	K	I	I	H	V	D	M	D	C	F	F	A	A	V	E	M	R	D	N	P	A	L	R	D	I	P	I	A	I	G	G	S	R	E	R	R	G	V	I	S	T	A	N	Y	P	A	R	K	F	G	V	R	S	A	M	P	T	G	M	A	L	K	L	C	P	H	L	T	L	L	P	.	G	R	F	D	A	Y	K
Query Conservation																																																																										.
Alig confidence																																			.	.	.	.																																				.
Template Conservation																																			.	.	.	.
Template Sequence		R	V	I	V	H	V	D	L	D	C	F	Y	A	Q	V	E	M	I	S	N	P	E	L	K	D	K	P	L	G	V	Q	Q	K	.	.	.	.	Y	L	V	V	T	C	N	Y	E	A	R	K	L	G	V	K	K	L	M	N	V	R	D	A	K	E	K	C	P	Q	L	V	L	V	N	G	E	D	L	T	R	Y	R
Template Known Secondary structure										T	T									T		G	G	G	T	T	S							T	.	.	.	.	T											S	S	S	S			T	T			G	G	G	G	G	S	S	T	T
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480					.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.																																			120	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	S	N	H	I	R	E	I	F	S	R	Y	T	S	R	I	E	P	L	S	L	D	E	A	Y	L	D	V	T	D	S	V	H	C	H	G	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	I	A	Q	E	I
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	M	S	Y	K	V	T	E	L	L	E	E	F	S	P	V	V	E	R	L	G	F	D	E	N	F	V	D	L	T	E	M	V	E	K	R	L	Q	Q	L	Q	S	D	E	L	S	A	V	T	V	S	G	H	V	Y	N	N	Q	S	I	N	L	L	D	V	L	H	I	R	L	L	V	G	S	Q	I	A	A	E	M
Template Known Secondary structure																S						T	T	T																T	S		S	S	G	G	G	G					S			T	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		R	Q	T	I	F	N	E	L	Q	L	T	A	S	A	G	V	A	P	V	K	F	L	A	K	I	A	S	D	M	N	K	P	N	G	Q	F	V	I	T	P	A	E	V	P	A	F	L	Q	T	L	.	P	L	A	K	I	P	G	V	G	K	V	S	A	A	K	L	E	A	M	G	L	R	T	C	G	D	V	Q	K
Query Conservation																																																				.
Alig confidence																																																				.
Template Conservation
Template Sequence		R	E	A	M	Y	N	Q	L	G	L	T	G	C	A	G	V	A	S	N	K	L	L	A	K	L	V	S	G	V	F	K	P	N	Q	Q	T	V	L	L	P	E	S	C	Q	H	L	I	H	S	L	N	H	I	K	E	I	P	G	I	G	Y	K	T	A	K	C	L	E	A	L	G	I	N	S	V	R	D	L	Q	T
Template Known Secondary structure																			S	S									T	S	S	T	T	T							G	G	G						T	T		S	S	G	G	G	S	T	T												T	T			S
Template Predicted Secondary structure
Template SS confidence
		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		C	D	L	V	M	L	L	K	R	F	G	K	.	F	G	R	I	L	W	E	R	S	Q	G	I	D	E	R	D	V	N	S	E	R	L	R	K	S	V	G	V	E	R	T	M	A	E	D	I	H	H	W	S	E	C	E	A	I	I	E	R	L	Y	P	E	L	E	R	R	L	A	K	V	K	P	D	L	L	I	A
Query Conservation														.
Alig confidence														.																																		.
Template Conservation																																																.
Template Sequence		F	S	P	K	I	L	E	K	E	L	G	I	S	V	A	Q	R	I	Q	K	L	S	F	G	E	D	N	S	P	V	I	L	S	G	P	P	Q	S	F	S	E	E	D	S	F	K	.	K	C	S	S	E	V	E	A	K	N	K	I	E	E	L	L	A	S	L	L	N	R	V	C	Q	D	G	R	K	P	H	T	V
Template Known Secondary structure		S																						T	T											S		S			B						T	.	T				S	S	S		T																	S					S
Template Predicted Secondary structure																																																.
Template SS confidence
		684	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.		730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.														.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.				.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Query Sequence		R	Q	G	V	K	L	K	F	D	D	F	Q	Q	T	T	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	W	P	R	L	N	K	A	D	L	I	A	T	A	R	K	T	W	D	E	R	R	G	G	R	G	.	.	.	V	R	L	V	G	L	H	V	T	L	L	D
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation
Template Sequence		R	L	I	I	R	R	Y	S	S	E	K	H	Y	G	R	E	S	R	Q	C	P	I	P	S	H	V	I	Q	K	L	G	T	G	N	Y	D	V	M	T	P	M	V	D	I	L	M	K	L	F	R	N	M	V	N	V	K	M	P	F	H	L	T	L	L	S	V	C	F	C	N	L	K
Template Known Secondary structure										S	S						B													T	T	T	S	S			T	T									T	T	T		S		S	S	S													B			S
Template Predicted Secondary structure
Template SS confidence
		763	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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