Job Description Q47155 Confidence 100.00% Date Thu Jan 5 12:36:31 GMT 2012 Rank 6 Aligned Residues 335 % Identity 29% Template c1s97D_ PDB info PDB header:transferase/dna Chain: D: PDB Molecule:dna polymerase iv; PDBTitle: dpo4 with gt mismatch Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.				.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		K	I	I	H	V	D	M	D	C	F	F	A	A	V	E	M	R	D	N	P	A	L	R	D	I	P	I	A	I	G	.	.	.	G	S	R	E	R	R	G	V	I	S	T	A	N	Y	P	A	R	K	F	G	V	R	S	A	M	P	T	G	M	A	L	K	L	C	P	H	L	T	L	L	P	G	R	F	D	A	Y
Query Conservation																																.	.	.
Alig confidence																																.	.	.
Template Conservation
Template Sequence		I	V	L	F	V	D	F	D	Y	F	Y	A	Q	V	E	E	V	L	N	P	S	L	K	G	K	P	V	V	V	C	V	F	S	G	R	F	E	D	S	G	A	V	A	T	A	N	Y	E	A	R	K	F	G	V	K	A	G	I	P	I	V	E	A	K	K	I	L	P	N	A	V	Y	L	P	M	R	K	E	V	Y
Template Known Secondary structure									T	T									S		G	G	G	T	T	S									S	S	S	T	T														T	T			T	T	S	B									T	T	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	A	S	N	H	I	R	E	I	F	S	R	Y	T	S	R	I	E	P	L	S	L	D	E	A	Y	L	D	V	T	D	S	V	H	C	H	G	S	A	T	L	I	A	Q	E	I	R	Q	T	I	F	N	E	L	Q	L	T	A	S	A	G	V	A	P	V	K	F	L	A	K	I	A	S	D	M	N	K	P	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Q	V	S	S	R	I	M	N	L	L	R	E	Y	S	E	K	I	E	I	A	S	I	D	E	A	Y	L	D	I	S	D	K	V	R	D	Y	R	E	A	Y	N	L	G	L	E	I	K	N	K	I	L	E	K	E	K	I	T	V	T	V	G	I	S	K	N	K	V	F	A	K	I	A	A	D	M	A	K	P	N
Template Known Secondary structure													T	T	T		S							T	T							T	T	T		S	S																													S	S													S	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		G	Q	F	V	I	T	P	A	E	V	P	A	F	L	Q	T	L	P	L	A	K	I	P	G	V	G	K	V	S	A	A	K	L	E	A	M	G	L	R	T	C	G	D	V	Q	K	C	D	L	V	M	L	L	K	R	F	G	K	F	G	.	R	I	L	W	E	R	S	Q	G	I	D	E	R	D	V	N	S	E	R
Query Conservation																																																														.
Alig confidence																																																														.																			.
Template Conservation																																																																																	.
Template Sequence		G	I	K	V	I	D	D	E	E	V	K	R	L	I	R	E	L	D	I	A	D	V	P	G	I	G	N	I	T	A	E	K	L	K	K	L	G	I	N	K	L	V	D	T	L	S	I	E	F	D	K	L	K	G	M	I	G	E	A	K	A	K	Y	L	I	S	L	A	R	D	E	Y	N	E	P	I	R	T	R	.
Template Known Secondary structure																		S		T	T	S	S	T	T											T	T	T			S	T	T	T	T	T	S	S																						T	T										.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	K	S	V	G	V	E	R	T	M	A	E	D	I	H	H	W	S	E	C	E	A	I	I	E	R	L	Y	P	E	L	E	R	R	L	A	K	V	K	P	D	L	L	I	A	R	Q	G	V	K	L	K	F	D	D	F	Q	Q	T	T	Q	E	H	V	W	P	R	L	N	K	A	D	L	I	A	T	A	R	K
Query Conservation
Alig confidence																																						.	.
Template Conservation																																						.	.
Template Sequence		V	R	K	S	I	G	R	I	V	T	M	K	R	N	S	R	N	L	E	E	I	K	P	Y	L	F	R	A	I	E	E	S	Y	Y	K	L	.	.	D	K	R	I	P	K	A	I	H	V	V	A	V	T	E	D	L	D	I	V	S	R	G	R	T	F	P	H	G	I	S	K	E	T	A	Y	S	E	S	V	K	L
Template Known Secondary structure																																						.	.	T	T													T	T	S										S	S
Template Predicted Secondary structure																																						.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		319	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		T	W	D	E	R	.	R	G	G	R	G	V	R	L	V	G	L	H	V	T	L	L	D
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		L	Q	K	I	L	E	E	D	E	R	K	I	R	R	I	G	V	R	F	S	K	F	I
Template Known Secondary structure								S			S
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions