Return to main results Retrieve Phyre Job Id

Job DescriptionP28630
Confidence99.49%DateThu Jan 5 11:44:59 GMT 2012
Rank16Aligned Residues122
% Identity17%Templated1jr3a1
SCOP infopost-AAA+ oligomerization domain-like post-AAA+ oligomerization domain-like DNA polymerase III clamp loader subunits, C-terminal domain
Resolution2.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   208.210.........220.........230.........240.........250.........260.........270.........280.......
Predicted Secondary structure 


















Query SS confidence 















































































Query Sequence  DAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMG
Query Conservation         
 
 


   
   
   
  
   
     

  
    
 
              
               
Alig confidence 



























































........











Template Conservation 


   
  
  

   
    
  
  
   
 
    
  
    
 


        ........          
 
Template Sequence  TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL. . . . . . . . GNDMAAIELRMR
Template Known Secondary structure 


T
TT

TT
TT

........
SGGGGT
Template Predicted Secondary structure 













........



Template SS confidence 















































































   243......250.........260.........270.........280.........290.........300.. .......310....
 
   288.290.........300.........310.........320.........330 .........
Predicted Secondary structure 








.
Query SS confidence 










































.








Query Sequence  EALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLL. LCHKPLADV
Query Conservation    
   
   
   
  
   
  

          

 
 
 .
        
Alig confidence 




























..











.








Template Conservation    
   
   
      
      

 
 .. 

  


 




   
 

 
Template Sequence  ELARTIPPTDIQLYYQTLLIGRKELPYAP. . DRRMGVEMTLLRALAFHPRMPL
Template Known Secondary structure  S
TTTSS..ST
SSS

Template Predicted Secondary structure 





..







Template SS confidence 




















































   315....320.........330.........340... ......350.........360.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions