Return to main results Retrieve Phyre Job Id

Job DescriptionP28630
Confidence96.86%DateThu Jan 5 11:44:59 GMT 2012
Rank42Aligned Residues195
% Identity13%Templatec3h4mC_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:proteasome-activating nucleotidase; PDBTitle: aaa atpase domain of the proteasome- activating nucleotidase
Resolution3.11 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50....... ..60.........70.........80....
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Query Sequence  PEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP. NTDWNAIFSLCQAMSLFASRQTLLLLL
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Template Sequence  HPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDE
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   192.......200.........210.........220.........230.........240.........250.........260.........270.
 
   85....90 .........100.........110.........120.........130... ......140.......
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Query Sequence  PENGPN. . . . . . . . . . . . . . AAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANR. . . SVQVTCQTPEQAQL
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Template Sequence  IDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNR. . . . . PDILDPAILRPGRFDRIIEVPAPDEKGR
Template Known Secondary structure  GGGTSB

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SSSSSS.....GGGB
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   272.......280.........290.........300.........310........ .320.........330.........340......
 
   148.150.........160.........170...... ...180.........190.........200......
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Query Sequence  PRWVAARAKQLNLELDDAANQVLCYCYEG. . . . NLLALAQALERLSLLWPDGKLTLPRVEQAV
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Template Sequence  LEILKIHTRKMNLAED. VNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAV
Template Known Secondary structure  TTTTS
B
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TTSTT

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   347..350.........360.. .......370.........380.........390.........400........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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