Job Description P28630 Confidence 42.46% Date Thu Jan 5 11:44:59 GMT 2012 Rank 106 Aligned Residues 192 % Identity 18% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.						50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence		Q	L	R	A	Q	L	N	E	G	L	R	A	A	Y	L	L	L	G	N	D	P	L	L	L	Q	E	S	Q	D	A	V	R	Q	V	A	A	A	Q	G	F	E	E	.	.	.	.	.	H	H	T	F	S	I	D	P	N	T	D	W	N	A	I	F	S	L	C	Q	A	M	S	L	F	A	S	R	Q	T	L	L	L
Query Conservation																																												.	.	.	.	.
Alig confidence																																												.	.	.	.	.																							.	.	.	.
Template Conservation																																																																							.	.	.	.
Template Sequence		D	K	F	L	K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	C	Q	A	N	F	I	S	I	K	G	P	E	L	L	T	M	W	F	G	E	S	E	A	N	V	R	E	I	F	D	K	A	R	Q	A	.	.	.	.	A	P	C	V	L	F	F
Template Known Secondary structure						T	S						S								T	T	S													T	T																T	T	T		T							T	T	T	T	T	T	T	.	.	.	.		S
Template Predicted Secondary structure																																																																							.	.	.	.
Template SS confidence
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.					570	.	.	.	.	.	.
		83	.	.	.	.	.														.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.															.	.																															.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.															.	.																															.	.	.
Query Sequence		L	L	P	E	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	A	A	I	N	E	Q	L	L	T	L	T	G	.	.	L	L	H	D	D	L	L	L	I	V	R	G	N	K	L	S	K	A	Q	E	N	A	A	W	F	T	A	L	A	N	.	.	.	R	S	V	Q	V	T	C	Q	T	P	E	Q
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.															.	.																															.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.															.	.																					.	.	.	.	.	.					.	.	.
Template Conservation																																																									.	.	.	.	.	.
Template Sequence		D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	P	D	I	I	D	P	.	.	.	.	.	.	A	I	L	R	P	G	R	L	D	Q	L	I	Y	I	P	L	P	D	E
Template Known Secondary structure		S	S	G	G	G	G					T	T	T	T		S	S			S														S	S		T	T	S	S								S		G	G	G			G	.	.	.	.	.	.	G	G	T	S	T	T	T	S											T
Template Predicted Secondary structure																																																									.	.	.	.	.	.
Template SS confidence
		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.							.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.					.	.	.	180	.	.	.	.	.	.	.	.	.	190						.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																		.	.	.	.															.	.	.	.	.
Query SS confidence																																		.	.	.	.															.	.	.	.	.
Query Sequence		A	Q	L	P	R	W	V	A	A	R	A	K	Q	L	N	L	E	L	D	D	A	A	N	Q	V	L	C	Y	C	Y	E	G	.	.	.	.	N	L	L	A	L	A	Q	A	L	E	R	L	S	L	.	.	.	.	.	L	W	P	D	G	K	L	T	L	P	R	V	E	Q	A	V	N	D	A	A
Query Conservation																																		.	.	.	.															.	.	.	.	.
Alig confidence																							.											.	.	.	.															.	.	.	.	.
Template Conservation																							.
Template Sequence		K	S	R	V	A	I	L	K	A	N	L	R	K	S	P	V	A	K	D	V	D	.	L	E	F	L	A	K	M	T	N	G	F	S	G	A	D	L	T	E	I	C	Q	R	A	C	K	L	A	I	R	E	S	I	E	S	E	I	V	P	E	I	R	R	D	H	F	E	E	A	M	R	F	A	R
Template Known Secondary structure		T										T	T	T	S		B		S	S			.					T	T	T		S	S															T	T														B										T	T
Template Predicted Secondary structure																							.
Template SS confidence
		651	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.		.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions