Job Description P28630 Confidence 98.62% Date Thu Jan 5 11:44:59 GMT 2012 Rank 31 Aligned Residues 202 % Identity 12% Template c2z4rB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa Resolution 3.05 Å

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		7	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.								.	.	.
Predicted Secondary structure												.																																																												.	.	.	.	.	.	.
Query SS confidence												.																																																												.	.	.	.	.	.	.
Query Sequence		E	Q	L	R	A	Q	L	N	E	G	.	L	R	A	A	Y	L	L	L	G	N	D	P	L	L	L	Q	E	S	Q	D	A	V	R	Q	V	A	A	A	Q	G	F	E	E	H	H	T	F	S	I	D	P	N	T	D	W	N	A	I	F	S	L	C	Q	A	M	S	L	F	A	.	.	.	.	.	.	.	S	R	Q
Query Conservation												.																																																												.	.	.	.	.	.	.
Alig confidence												.																											.																																	.	.	.	.	.	.	.
Template Conservation																																							.
Template Sequence		H	A	A	L	E	V	A	K	H	P	G	R	Y	N	P	L	F	I	Y	G	G	V	G	L	G	K	T	H	L	L	Q	S	I	G	N	Y	V	.	V	Q	N	E	P	D	L	R	V	M	Y	I	T	S	E	K	F	L	N	D	L	V	D	S	M	K	E	G	K	L	N	E	F	R	E	K	Y	R	K	K	V	D
Template Known Secondary structure										S	T	T	T	S								S	S	S	S	S													.				S	S	S	S																				T	S										T	T	T		S
Template Predicted Secondary structure																																							.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.				.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		T	L	L	L	L	L	P	E	N	G	P	N	A	A	I	N	E	Q	L	L	T	L	T	.	.	.	G	L	L	H	D	D	L	L	L	I	V	R	G	N	K	L	S	K	A	Q	E	N	A	A	W	F	T	A	L	A	N	R	S	V	Q	V	T	C	Q	T	P	E	Q	A	Q	L	P	R	W	V	A	A	R	A
Query Conservation																									.	.	.
Alig confidence																									.	.	.
Template Conservation
Template Sequence		I	L	L	I	D	D	V	Q	F	L	I	G	K	T	G	V	Q	T	E	L	F	H	T	F	N	E	L	H	D	S	G	K	Q	I	V	I	C	S	D	R	E	P	Q	K	L	S	E	F	Q	D	R	L	V	S	R	F	Q	M	G	L	V	A	K	L	E	P	P	D	E	E	T	R	K	S	I	A	R	K	M	L
Template Known Secondary structure								G	G	G	G	T	T																	T	T	T								S	S		T	T	T		S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		K	Q	L	N	L	E	L	D	D	A	A	N	Q	V	L	C	Y	C	Y	E	G	N	L	L	A	L	A	Q	A	L	E	R	L	S	L	L	.	.	W	P	D	G	K	L	T	L	P	R	V	E	Q	A	V	N	D	A
Query Conservation																																						.	.
Alig confidence																																						.	.
Template Conservation
Template Sequence		E	I	E	H	G	E	L	P	E	E	V	L	N	F	V	A	E	N	V	D	D	N	L	R	R	L	R	G	A	I	I	K	L	L	V	Y	K	E	T	T	G	K	E	V	D	L	K	E	A	I	L	L	L	K	D	F
Template Known Secondary structure					T					T	T											S																			S	S	S											T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions