Job Description P28630 Confidence 99.71% Date Thu Jan 5 11:44:59 GMT 2012 Rank 8 Aligned Residues 282 % Identity 16% Template c2gnoA_ PDB info PDB header:replication Chain: A: PDB Molecule:dna polymerase iii, gamma subunit-related protein; PDBTitle: crystal structure of a dna polymerase iii, gamma subunit-related2 protein (tm0771) from thermotoga maritima msb8 at 2.00 a resolution Resolution 2.00 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60							.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																								.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.
Query Sequence		E	Q	L	R	A	Q	L	N	E	G	L	R	A	A	Y	L	L	L	G	N	D	P	L	L	L	Q	E	S	Q	D	A	V	R	Q	V	A	A	A	Q	G	F	E	E	H	H	T	F	S	I	D	P	N	T	D	.	.	.	.	.	.	W	N	A	I	F	S	L	C	Q	A	M	S	L	F	A	S	R	Q	T	L
Query Conservation																																																								.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.
Template Conservation
Template Sequence		E	T	L	K	R	I	I	E	K	S	E	G	I	S	I	L	I	N	G	E	D	L	S	Y	P	R	E	V	S	L	E	L	P	E	Y	V	E	K	F	P	P	K	A	S	D	V	L	E	I	D	P	E	G	E	N	I	G	I	D	D	I	R	T	I	K	D	F	L	N	Y	S	P	E	L	Y	T	R	K	Y	V
Template Known Secondary structure										T		S	S								S	S	S	S															T	S				T	T	T							S	S	S		B													T	S			S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		L	L	L	L	P	E	N	G	P	N	A	A	I	N	E	Q	L	L	T	L	T	G	L	L	H	D	D	L	L	L	I	V	R	G	N	K	L	S	K	A	Q	E	N	A	A	W	F	T	A	L	A	N	R	S	V	Q	V	T	C	Q	T	P	E	Q	A	Q	L	P	R	W	V	A	A	R	.	A	K	Q	L	N
Query Conservation																																																																												.
Alig confidence																								.														.	.	.	.	.	.																																	.
Template Conservation																								.														.	.	.	.	.	.
Template Sequence		I	V	H	D	C	E	R	X	T	Q	Q	A	A	N	A	F	L	K	A	L	E	E	.	P	P	E	Y	A	V	I	V	L	N	T	R	R	.	.	.	.	.	.	W	H	Y	L	L	P	T	I	K	S	R	V	F	R	V	V	V	N	V	P	K	E	F	R	D	L	V	K	E	K	I	G	D	L	W	E	E	L
Template Known Secondary structure				T	T	G	G	G	B								T						S	.			T	T								S		.	.	.	.	.	.	G	G	G	S						T	T	S																				T	T
Template Predicted Secondary structure																								.														.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.							.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		L	E	L	D	D	A	A	N	Q	V	L	C	Y	C	Y	E	G	N	L	L	A	L	A	Q	A	L	E	R	L	S	L	L	W	P	D	.	.	G	K	L	T	L	P	R	V	E	Q	A	V	N	D	A	A	H	F	T	P	F	H	W	V	D	A	L	L	M	G	K	S	K	R	A	L	H	I	L	Q	Q	L	R
Query Conservation																																					.	.
Alig confidence																																					.	.														.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.
Template Sequence		P	L	L	E	R	D	F	K	T	A	L	E	A	Y	K	L	G	A	E	K	L	S	G	L	X	E	S	L	K	V	L	E	T	E	K	L	L	K	K	V	L	S	K	G	L	E	G	Y	L	A	.	.	.	.	.	.	C	R	E	L	L	E	R	F	S	K	V	E	S	K	E	F	F	A	L	F	D	Q	V	T
Template Known Secondary structure		G	G	G	G	T																										S						T	T	T	T	T		S								.	.	.	.	.	.											S		G	G	G
Template Predicted Secondary structure																																																				.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.							.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	G	S	E	P	V	I	L	L	R	T	L	Q	R	E	L	L	L	L	V	N	L	K	R	Q	S	A	H	T	P	L	R	A	L	F	D	K	H	R	V	W	Q	N	R	R	G	M	M	G	E	A	L	N	R	L	S	Q	T	Q	L	R	Q	A	V	Q	L	L	T	R	T	E	L	T	L	K	Q	D	Y	G
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Sequence		N	T	I	T	G	K	D	A	F	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	R	L	T	R	I	I	L	H	E	N	T	W	E	S	V	E	D	Q	K	S	V	S	F	L	D	S	I	L	R	V	K	I	A	N	L	.
Template Known Secondary structure				S		T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	S				S															T			G	G	G		.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.																																.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	V	W	A	E	L	E	G	L	S	L	L	L	C	H	K
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	N	N	K	L	T	L	X	N	I	L	A	I	H	R	E	R
Template Known Secondary structure		.
Template Predicted Secondary structure		.
Template SS confidence
			289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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