Job Description P28630 Confidence 99.67% Date Thu Jan 5 11:44:59 GMT 2012 Rank 10 Aligned Residues 285 % Identity 13% Template c1sxjD_ PDB info PDB header:replication Chain: D: PDB Molecule:activator 1 41 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.																	.	.	.	.
Predicted Secondary structure																																											.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Q	L	R	A	Q	L	N	E	G	L	R	A	A	Y	L	L	L	G	N	D	P	L	L	L	Q	E	S	Q	D	A	V	R	Q	V	A	A	A	Q	G	F	.	E	E	H	H	T	F	S	I	D	P	N	T	D	W	N	A	I	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	C	Q
Query Conservation																																											.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	L	K	K	T	L	K	S	A	N	L	P	H	M	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	L	A	L	T	K	E	L	Y	G	P	D	L	M	K	S	R	I	L	E	L	N	A	S	D	E	R	G	I	S	I	V	R	E	K	V	K	N	F	A	R	L	T	V	S	K	P	S	K	H	D	L
Template Known Secondary structure								T	T		T	T									S	T	T	S	S																			T	T	S						S	S	S								T	T								S							T	T
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	S	L	F	A	S	R	Q	T	L	L	L	L	L	P	E	N	G	P	N	A	A	I	N	E	Q	L	L	T	L	T	G	L	L	H	D	D	L	L	L	I	V	R	G	N	K	L	S	K	A	Q	E	N	A	A	W	F	T	A	L	A	N	R	S	V	Q	V	T	C	Q	T	P	E	Q	A	Q	L	P	R
Query Conservation
Alig confidence																												.																											.	.	.	.	.	.
Template Conservation																												.																											.	.	.	.	.	.
Template Sequence		E	N	Y	P	C	P	P	Y	K	I	I	I	L	D	E	A	D	S	M	T	A	D	A	Q	S	A	.	L	R	R	T	M	E	T	Y	S	G	V	T	R	F	C	L	I	C	N	Y	V	T	R	I	I	D	.	.	.	.	.	.	P	L	A	S	Q	C	S	K	F	R	F	K	A	L	D	A	S	N	A	I	D
Template Known Secondary structure				S				S							T	T	G	G	G	S								.								T	T	T	T								S		G	G	G	S			.	.	.	.	.	.						S
Template Predicted Secondary structure																												.																											.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.							.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.
Query SS confidence																																													.	.	.	.
Query Sequence		W	V	A	A	R	A	K	Q	L	N	L	E	L	D	D	A	A	N	Q	V	L	C	Y	C	Y	E	G	N	L	L	A	L	A	Q	A	L	E	R	L	S	L	L	W	.	.	.	.	P	D	G	K	L	T	L	P	R	V	E	Q	A	V	N	D	A	A	H	F	T	P	F	H	W	V	D	A	L	L	M	G	K
Query Conservation																																													.	.	.	.
Alig confidence																																													.	.	.	.
Template Conservation
Template Sequence		R	L	R	F	I	S	E	Q	E	N	V	K	C	D	D	G	V	L	E	R	I	L	D	I	S	A	G	D	L	R	R	G	I	T	L	L	Q	S	A	S	K	G	A	Q	Y	L	G	D	G	K	N	I	T	S	T	Q	V	E	E	L	A	G	V	V	P	H	D	I	L	I	E	I	V	E	K	V	K	S	G	D
Template Known Secondary structure									T	T	T															T	S	S												T									S														T				S												S
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	R	A	L	H	I	L	Q	Q	L	R	L	E	G	S	E	P	V	I	L	L	R	T	L	Q	R	E	L	L	L	L	V	N	L	K	R	Q	S	A	H	T	P	L	R	A	L	F	D	K	H	R	V	W	Q	N	R	R	G	M	M	G	E	A	L	N	R	L	S	Q	T	Q	L	R	Q	A	V	Q	L	L
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	D	E	I	K	K	Y	V	N	T	F	M	K	S	G	W	S	A	A	S	V	V	N	Q	L	H	E	Y	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	D	N	F	D	T	N	F	K	N	Q	I	S	W	L	L
Template Known Secondary structure															T	S				T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.																																		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	T	E	L	T	L	K	Q	D	Y	G	Q	S	V	W	A	E	L	E	G	L	S	L	L	L	C	H
Query Conservation
Alig confidence													.	.
Template Conservation													.	.
Template Sequence		F	T	T	D	S	R	L	N	N	G	T	.	.	N	E	H	I	Q	L	L	N	L	L	V	K	I	S	Q
Template Known Secondary structure									T	T			.	.
Template Predicted Secondary structure													.	.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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