Job Description P28630 Confidence 99.18% Date Thu Jan 5 11:44:59 GMT 2012 Rank 23 Aligned Residues 208 % Identity 15% Template c1sxjA_ PDB info PDB header:replication Chain: A: PDB Molecule:activator 1 95 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		7	.	.	10	.	.	.	.	.																		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Q	L	R	A	Q	L	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	R	A	A	Y	L	L	L	G	N	D	P	L	L	L	Q	E	S	Q	D	A	V	R	Q	V	A	A	A	Q	G	F	E	E	H	H	T	F	S	I	D	P	N	T	D	W	N	A	I	F	S	L	C	Q
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Conservation																																																							.	.	.	.
Template Sequence		M	K	L	K	N	W	L	A	N	W	E	N	S	K	K	N	S	F	K	H	A	G	K	D	G	S	G	V	F	R	A	A	M	L	Y	G	P	P	G	I	G	K	T	T	A	A	H	L	V	A	Q	E	L	.	.	.	.	G	Y	D	I	L	E	Q	N	A	S	D	V	R	S	K	T	L	L	N	A	G	V	K
Template Known Secondary structure										T							T	T	T					T	T	S	T	T	S		S							S	T	T	S	S												T	.	.	.	.	T								T	T	S										T	G	G
Template Predicted Secondary structure																																																							.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370					.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		70														.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Query Sequence		A	.	.	.	.	.	.	.	.	.	.	.	.	.	M	S	L	F	A	S	R	Q	T	L	L	L	L	L	P	E	N	G	P	N	.	.	A	A	I	N	E	Q	L	L	T	L	T	G	L	L	H	D	D	L	L	L	I	V	R	G	N	K	L	S	K	A	Q	E	N	A	A	W	F	T	A	L	A	N	R	S
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.																																	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.
Template Sequence		N	A	L	D	N	M	S	V	V	G	Y	F	K	H	Q	N	L	N	G	K	H	F	V	I	I	M	D	E	V	D	G	M	S	G	G	D	R	G	G	V	G	Q	L	A	Q	F	C	R	K	T	S	T	P	L	I	L	I	C	N	E	R	N	L	P	K	M	R	P	.	.	.	.	.	.	.	F	D	R	V	C
Template Known Secondary structure		G	G	T	T				S	T	T	T	T	T				S	S	T	T	S							S	G	G	G			T	T	S	T	T													S	S							S		T	T	S	S	T	T	G	G	.	.	.	.	.	.	.	G	T	T	T	S
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.								.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		V	Q	V	T	C	Q	T	P	E	Q	A	Q	L	P	R	W	V	A	A	R	A	K	Q	L	N	L	E	L	D	D	A	A	N	Q	V	L	C	Y	C	Y	E	G	N	L	L	A	L	A	Q	A	L	E	R	L	S	L	L	W	P	D	.	G	K	L	T	L	P	R	V	E	Q	A	V	N	D	A	A	H	F	T
Query Conservation																																																														.
Alig confidence																																																														.
Template Conservation
Template Sequence		L	D	I	Q	F	R	R	P	D	A	N	S	I	K	S	R	L	M	T	I	A	I	R	E	K	F	K	L	D	P	N	V	I	D	R	L	I	Q	T	T	R	G	D	I	R	Q	V	I	N	L	L	S	T	I	S	T	T	T	K	T	I	N	H	E	N	I	N	E	I	S	K	A	W	E	K	N	I	A	L	K
Template Known Secondary structure																										T					T	T									T	T	T										T						S	S				T	T											T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
		214	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	H	W	V	D	A	L	L	M	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	F	D	I	A	H	K	M	L	D	G	Q
Template Known Secondary structure										T	B	G	G
Template Predicted Secondary structure
Template SS confidence
		551	.	.	.	.	.	.	.	.	560	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions