Job Description P28630 Confidence 97.01% Date Thu Jan 5 11:44:59 GMT 2012 Rank 40 Aligned Residues 201 % Identity 11% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.
Query SS confidence																																																																						.	.	.
Query Sequence		M	I	R	L	Y	P	E	Q	L	R	A	Q	L	N	E	G	L	R	A	A	Y	L	L	L	G	N	D	P	L	L	L	Q	E	S	Q	D	A	V	R	Q	V	A	A	A	Q	G	F	E	E	H	H	T	F	S	I	D	P	N	T	D	W	N	A	I	F	S	L	C	.	.	.	Q	A	M	S	L	F	A	S	R
Query Conservation																																																																						.	.	.
Alig confidence						.	.															.																												.	.																			.	.	.
Template Conservation						.	.															.																												.	.
Template Sequence		M	K	E	I	.	.	L	E	K	I	K	K	I	S	C	A	E	C	P	V	.	L	I	T	G	E	S	G	V	G	K	E	V	V	A	R	L	I	H	K	L	S	D	R	S	K	E	P	.	.	F	V	A	L	N	V	A	S	I	P	R	D	I	F	E	A	E	L	F	G	Y	E	K	G	A	F	T	G	A	V
Template Known Secondary structure						.	.								T	T			S			.					S	T	T	S	S												S	T	T	T	T	S		.	.						T	T	T	S												B		T	T	S	S	T	T
Template Predicted Secondary structure						.	.															.																												.	.
Template SS confidence
		146	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		78													.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100											.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Query Sequence		Q	.	.	.	.	.	.	.	.	.	.	.	.	T	L	L	L	L	L	P	E	N	G	P	N	A	A	I	N	E	Q	L	L	T	L	.	.	.	.	.	.	.	.	.	.	T	G	L	L	H	D	D	L	L	L	I	V	R	G	N	K	.	.	.	.	.	L	S	K	A	Q	E	N	A	A	W	F	T	A	L
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation
Template Sequence		S	S	K	E	G	F	F	E	L	A	D	G	G	T	L	F	L	D	E	I	G	E	L	S	L	E	A	Q	A	K	L	L	R	V	I	E	S	G	K	F	Y	R	L	G	G	R	K	E	I	E	V	N	V	R	I	L	A	A	T	N	R	N	I	K	E	L	V	K	E	G	K	F	R	E	D	L	Y	Y	R	L
Template Known Secondary structure		S		B							T	T	T	S						S	G	G	G																S					B	T			S													S	S								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.					.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																									.	.	.	.									.	.	.														.
Query SS confidence																									.	.	.	.									.	.	.														.
Query Sequence		A	N	R	S	V	Q	V	T	C	Q	T	P	E	Q	A	Q	L	P	R	W	V	A	A	.	.	.	.	R	A	K	Q	L	N	L	E	.	.	.	L	D	D	A	A	N	Q	V	L	C	Y	C	Y	.	E	G	N	L	L	A	L	A	Q	A	L	E	R	L	S	L	L	W	P	D	G	K	L	T	L	P	R	V
Query Conservation																									.	.	.	.									.	.	.														.
Alig confidence																									.	.	.	.									.	.	.														.
Template Conservation
Template Sequence		G	V	I	E	I	E	I	P	P	L	R	E	R	K	E	D	I	I	P	L	A	N	H	F	L	K	K	F	S	R	K	Y	A	K	E	V	E	G	F	T	K	S	A	Q	E	L	L	L	S	Y	P	W	Y	G	N	V	R	E	L	K	N	V	I	E	R	A	V	L	F	S	E	G	K	F	I	D	R	G	E	L
Template Known Secondary structure		T	T								G	G	G																				T	T																	S			T	T																		S	S
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		203	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	C	L	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions