Job Description P06710 Confidence 96.16% Date Thu Jan 5 10:59:20 GMT 2012 Rank 408 Aligned Residues 104 % Identity 14% Template c3tmiA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase ddx58; PDBTitle: structural basis for rna recognition and activation of rig-i Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.													.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	A	L	A	N	G	L	S	L	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	.	.	.	.	.	.	.	.	.	.	.	.	G	V	C	D	N	C	R	E	I	E	Q	G	R	F	V	D	L	I	E
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		L	E	L	A	L	P	A	M	K	G	K	N	.	.	.	.	T	I	I	C	A	P	T	G	C	G	K	T	F	V	S	L	L	I	C	E	H	H	L	K	K	F	P	Q	G	Q	K	G	K	V	V	F	F	A	N	Q	I	P	V	Y	E	Q	Q	K	S	V	F	S	K	Y	F	E	R	H	G	Y	R	V	T	G
Template Known Secondary structure				T	T					T	T			.	.	.	.							T	T	S																T	S		T	T										S	S																T	T	T	T
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.					260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		93	.	.	.	.	.	.	100														.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Query Sequence		I	D	A	A	S	R	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	A	.	.	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	S
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation
Template Sequence		I	S	G	A	T	A	E	N	V	P	V	E	Q	I	V	E	N	N	D	I	I	I	L	T	P	Q	I	L	V	N	N	L	K	K	G	T	I	P	S	L	S	I	F	T	L	M	I	F	D	E	C	H	N	T	S
Template Known Secondary structure				T	T	T		S	S	S								T		S															T	T	S	S			G	G	G		S						T	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions