Job Description P06710 Confidence 98.02% Date Thu Jan 5 10:59:20 GMT 2012 Rank 154 Aligned Residues 138 % Identity 20% Template c3qmzA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:cytoplasmic dynein heavy chain; PDBTitle: crystal structure of the cytoplasmic dynein heavy chain motor domain Resolution 6.00 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	H	V	L	T	A	L	A	N	G	L	S	L	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I	E	Q	G	R	F	V	D	L	I	E	I	D	A	A	S	R	T	K
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	E	F	L	K	K	C	M	Q	F	Y	Y	M	Q	K	T	Q	Q	A	L	I	L	V	G	K	A	G	C	G	K	T	A	T	W	K	T	V	I	D	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	F	D	G	H	A	N	V	V	Y	V	I	D	T	K	V	L	T	K
Template Known Secondary structure																	S	S										T	T	S	S	T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	S	S										S	S	S		T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2042	.	.	.	.	.	.	.	2050	.	.	.	.	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.																			.	.	.	.	.	.	2090	.	.	.	.	.	.	.	.	.	2100	.	.	.
																					101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	A	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	S	R	H	S	F	N	A	L	L	K	T	L	E	.	.	.	.	E	P	P	E	H	V	K	F	L	L	A	T	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.
Template Conservation
Template Sequence		E	S	L	Y	G	S	M	L	K	A	T	L	E	W	R	D	G	L	F	T	S	I	L	R	R	V	N	D	D	I	T	G	T	F	K	N	S	R	I	W	V	V	F	D	S	D	L	D	P	E	Y	V	E	A	M	N	S	V	L	D	D	N	K	G	E	R	L	P	I	P	P	N	F	R	I	L	F	E	T	D
Template Known Secondary structure		S	S	S	S	S	S				S	S	T	T																S	S			S	S										S	S		S		S	T	T							T	T		B						B												S
Template Predicted Secondary structure
Template SS confidence
		2112	.	.	.	.	.	.	.	2120	.	.	.	.	.	.	.	.	.	2130	.	.	.	.	.	.	.	.	.	2140	.	.	.	.	.	.	.	.	.	2150	.	.	.	.	.	.	.	.	.	2160	.	.	.	.	.	.	.	.	.	2170	.	.	.	.	.	.	.	.	.	2180	.	.	.	.	.	.	.	.	.	2190	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	Q	K	L	P	V	T	I	L	S	R	C	L	Q	F	H	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	D	H	T	T	P	A	T	I	T	R	C	G	L	L	W	F	S
Template Known Secondary structure			S	T	T					T	T	S
Template Predicted Secondary structure
Template SS confidence
		2198	.	2200	.	.	.	.	.	.	.	.	.	2210	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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