Return to main results Retrieve Phyre Job Id

Job DescriptionP06710
Confidence99.71%DateThu Jan 5 10:59:20 GMT 2012
Rank77Aligned Residues230
% Identity25%Templatec3k1jA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent protease lon; PDBTitle: crystal structure of lon protease from thermococcus onnurineus na1
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30.........40.........50.........60.........70........
Predicted Secondary structure 
































..........
Query SS confidence 





































































. . . . . . . . . .
Query Sequence  KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN. . . . . . . . . .
Query Conservation 
 

       
       
             
  

 
 



 
   
  
                ..........
Alig confidence 



























..
.





































..........
Template Conservation           




     
  
     .. .


 
 

 


 





  
 
      
                 
Template Sequence  EVPEKLIDQVIGQEHAVEVIKTAANQKR. . H. VLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVP
Template Known Secondary structure 


SS

S
TT
..
.

TTSSTS

SS


TT
TTS
Template Predicted Secondary structure 











..
.






















Template SS confidence 















































































   34.....40.........50.........60. . .......70.........80.........90.........100.........110
 
   7980.........90.........100 .........110.........120. ..
Predicted Secondary structure  .............












.......




...............
Query SS confidence  . . . . . . . . . . . . .





















. . . . . . .




















. . . . . . . . . . . . . . .

Query Sequence  . . . . . . . . . . . . . CREIEQGRFVDLIEIDAASRTK. . . . . . . VEDTRDLLDNVQYAPARGRFK. . . . . . . . . . . . . . . VY
Query Conservation  .............                      .......    
                ...............
 
Alig confidence  .............





















.......




















...............

Template Conservation                            


       
       
   
 
 
      
      
  
 
  

 


Template Sequence  ACQGRRIVEKYREKAKSQESVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFLGTPAHERVEPGMIHRAHKGVL
Template Known Secondary structure  TTT






TT
SS


TT











GGGG

TTTS
Template Predicted Secondary structure 
















































Template SS confidence 















































































   111........120.........130.........140.........150.........160.........170.........180.........190
 
   124.....130.........140..... ....150....... ..160.........170......
Predicted Secondary structure 






.....................





..






....
Query SS confidence 





















. . . . . . . . . . . . . . . . . . . . .











. .


















. . . .
Query Sequence  LIDEVHMLSRHSFNALLKTLEE. . . . . . . . . . . . . . . . . . . . . PPEHVKFLLATT. . DPQKLPVTILSRCLQFHLK. . . .
Query Conservation 



   
       


 

 .....................       
    ..        
 


      ....
Alig confidence 





















.....................











..


















....
Template Conservation   


   
       
  


   
 
                

 
  

          
   



           
Template Sequence  FIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRGYGYEVYMR
Template Known Secondary structure  TTGGGS
S

B
S
TTSGGGG
B
S




S
S

Template Predicted Secondary structure 


























Template SS confidence 















































































   243......250.........260.........270.........280.........290.........300.........310.........320..
 
   177..180.........190...... ...200.........210 .. .......220........ .230....
Predicted Secondary structure  ......





..



...

.......

....




Query SS confidence  . . . . . .



















. .













. . .

. . . . . . .















. . . .





Query Sequence  . . . . . . ALDVEQIRHQLEHILNEEHI. . AHEPRALQLLARAA. . . EG. . . . . . . SLRDALSLTDQAIASG. . . . DGQVST
Query Conservation  ......          
  
   
  ..              ... 
.......  
             ....      
Alig confidence  ......



















..













...

.......















....





Template Conservation   
              
   
            

  

    
 

   

 
  


  


 
   
       

 
Template Sequence  TTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVER
Template Known Secondary structure  S


SS

BBTT
STT

TT
SSB
Template Predicted Secondary structure 




























Template SS confidence 















































































   323......330.........340.........350.........360.........370.........380.........390.........400..
 
   235....240.
Predicted Secondary structure 
Query SS confidence 






Query Sequence  QAVSAML
Query Conservation         
Alig confidence 






Template Conservation 


  

Template Sequence  EDVIEAV
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 






   403......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions