Job Description P06710 Confidence 96.30% Date Thu Jan 5 10:59:20 GMT 2012 Rank 391 Aligned Residues 122 % Identity 17% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.													.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																													.	.	.									.	.	.	.	.	.	.	.	.	.	.	.																			.
Query SS confidence																													.	.	.									.	.	.	.	.	.	.	.	.	.	.	.																			.
Query Sequence		Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	.	.	.	I	T	A	T	P	C	G	V	.	.	.	.	.	.	.	.	.	.	.	.	C	D	N	C	R	E	I	E	Q	G	R	F	V	D	L	I	E	I	.	D	A	A	S	R	T	K	V	E	D	T
Query Conservation																													.	.	.									.	.	.	.	.	.	.	.	.	.	.	.																			.
Alig confidence																													.	.	.									.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation
Template Sequence		L	A	L	V	G	S	S	G	C	G	K	S	T	V	V	Q	L	L	E	R	F	Y	D	P	M	A	G	S	V	F	L	D	G	K	E	I	K	Q	L	N	V	Q	W	L	R	A	Q	L	G	I	V	S	Q	E	P	I	L	F	D	C	S	I	A	E	N	I	A	Y	G	D	N	S	R	V	V	S	Y	E	E	I
Template Known Secondary structure							S	S	S	T	T									T	T	S	S			S						S	S	S	S		B	T	S	S						T	T	S						S	S					S	S	B						T				S	S
Template Predicted Secondary structure
Template SS confidence
		1062	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.
		105	.	.	.	.	110	.	.	.	.	.	.	.																																		.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Query Sequence		R	D	L	L	D	N	V	Q	Y	A	P	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	F	K	V	Y	L	I	D	E	V	.	H	M	L	S	R	H	S	F	N	A	L	L	K	T	L	E	E	P	P	E	H	V
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation
Template Sequence		V	R	A	A	K	E	A	N	I	H	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	D	K	G	T	Q	L	S	G	G	Q	K	Q	R	I	A	I	A	R	A	L	V	R	Q	P	H	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A	L	D	K	A	R	E	G	R
Template Known Secondary structure									T						S	S	T	T	T	G	G	G		B		S	T	T	S		S	S																			S	S					S		S	S	S																	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		1142	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.
		151	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	L	L	A	T	T	D	P	Q	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	C	I	V	I	A	H	R	L	S	T	I
Template Known Secondary structure								S		T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		1222	.	.	.	.	.	.	.	1230	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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