Job Description P06710 Confidence 99.26% Date Thu Jan 5 10:59:20 GMT 2012 Rank 93 Aligned Residues 199 % Identity 21% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		R	P	Q	T	F	A	D	V	V	G	Q	E	H	V	L	T	A	L	A	N	G	L	S	L	.	.	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I	E	Q	G	R	F	V
Query Conservation																										.	.
Alig confidence																										.	.						.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	P	Q	E	E	I	E	F	V	G	E	H	P	K	I	L	E	I	K	R	L	I	P	K	I	A	K	S	K	A	P	.	V	L	I	T	G	E	S	G	T	G	K	E	I	V	A	R	L	I	H	R	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	K	G
Template Known Secondary structure													S															T	S		S		.							T	T	S	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S
Template Predicted Secondary structure																																	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.																							.	.	180	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.												.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.												.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	I	E	I	D	A	A	S	R	T	K	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	A	R	G	R	F	K	.	.	.	.	.	.	.	.	.	.	.	V	Y	L	I	D	E	V	H	M	L	S	R	H	S	F	N	A	L	L	K	T	L	.	.	.	.	.	.	.	.	.	.	.	E	E	P
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	F	V	D	L	N	C	A	S	I	P	Q	E	L	A	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	L	T	R	K	K	G	K	L	E	L	A	D	Q	G	T	L	F	L	D	E	V	G	E	L	D	Q	R	V	Q	A	K	L	L	R	V	L	E	T	G	S	F	T	R	L	G	G	N	Q	K	I
Template Known Secondary structure								S	S	S	S		T	T	T										S		S	S	S	S												T	T	T	S						T	G	G	G	S															S					B	T
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		147	.	.	150	.	.	.	.	.	.	.	.	.								160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.								.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.																					.	.	.	.																	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.																					.	.	.	.																	.	.	.	.	.	.	.
Query Sequence		P	E	H	V	K	F	L	L	A	T	T	D	P	.	.	.	.	.	.	.	Q	K	L	P	V	T	I	L	S	R	C	L	Q	F	H	L	K	A	L	D	.	.	.	.	V	E	Q	I	R	H	Q	L	E	H	I	L	N	E	E	H	.	.	.	.	.	.	.	I	A	H	E	P	R	A	L	Q	L	L	A	R
Query Conservation															.	.	.	.	.	.	.																					.	.	.	.																	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.																					.	.	.	.																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	D	I	R	V	I	S	A	T	N	K	N	L	E	E	E	I	K	K	G	N	F	R	E	D	L	Y	Y	R	L	S	V	F	Q	I	Y	L	P	P	L	R	E	R	G	K	D	V	I	L	L	A	E	Y	F	L	K	K	F	A	K	E	Y	K	K	N	C	F	E	L	S	E	E	T	K	E	Y	L	X	K
Template Known Secondary structure												S	S								T	T	S	S									T	S								G	G	G	S	T	T																	T	T						B										T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		209	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		A	A	.	E	G	S	L	R	D	A	L	S	L	T	D	Q	A	I	A	S	G	D	G	Q	V
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		Q	E	W	K	G	N	V	R	E	L	K	N	L	I	E	R	A	V	I	L	C	E	G	E	V
Template Known Secondary structure					T	T															T			S	S	B
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions