Job Description P06710 Confidence 99.94% Date Thu Jan 5 10:59:20 GMT 2012 Rank 31 Aligned Residues 209 % Identity 17% Template c3bosA_ PDB info PDB header:hydrolase regulator,dna binding protein Chain: A: PDB Molecule:putative dna replication factor; PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution Resolution 1.75 Å

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		5	.	.	.	.	10	.	.	.		.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure											.					.
Query SS confidence											.					.
Query Sequence		V	L	A	R	K	W	R	P	Q	.	T	F	A	D	.	V	V	G	Q	E	H	V	L	T	A	L	A	N	G	L	S	L	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I
Query Conservation											.					.
Alig confidence											.					.																							.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	P	V	H	L	P	D	D	E	T	F	T	S	Y	Y	P	G	N	D	E	L	I	G	A	L	K	S	A	A	S	G	D	G	V	Q	A	.	I	Y	L	W	G	P	V	K	S	G	R	T	H	L	I	H	A	A	C	A	R	A	N	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T		S	T	T	T	S																	T		S		S		.						S	T	T	S	S															T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.						.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.
Query Sequence		E	Q	G	R	F	V	D	L	I	E	I	D	A	A	S	R	T	K	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	A	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	S	R	.	.	.	.	.	H	S	F	N	A	L	L	K	T	L	E	E	P	P	E	H	V	K	F	L	L	A	T	T
Query Conservation																																																					.	.	.	.	.
Alig confidence		.	.																										.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template Conservation		.	.																										.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	E	R	R	S	F	Y	I	P	L	G	I	H	A	S	I	S	T	A	L	L	E	G	L	E	Q	.	.	.	.	.	.	.	.	.	.	F	D	L	I	C	I	D	D	V	D	A	V	A	G	H	P	L	W	E	E	A	I	F	D	L	Y	N	R	V	A	E	Q	K	R	G	S	L	I	V	S	A	S	A
Template Known Secondary structure		.	.	T								G	G	G	G	G	G	S		G	G	G	G	T	T	G	G	G	.	.	.	.	.	.	.	.	.	.	S	S						T	G	G	G	G	T	T																				S								S	S
Template Predicted Secondary structure		.	.																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
				79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.											.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		158	.				160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.													.	.	.																																																										.	.	.
Query SS confidence				.	.	.													.	.	.																																																										.	.	.
Query Sequence		D	P	.	.	.	Q	K	L	P	V	T	I	L	S	R	C	L	.	.	.	Q	F	H	L	K	A	L	D	V	E	Q	I	R	H	Q	L	E	H	I	L	N	E	E	H	I	A	H	E	P	R	A	L	Q	L	L	A	R	A	A	E	G	S	L	R	D	A	L	S	L	T	D	Q	A	I	A	S	G	.	.	.
Query Conservation				.	.	.													.	.	.																																																										.	.	.
Alig confidence				.	.	.													.	.	.																																																										.	.	.
Template Conservation
Template Sequence		S	P	X	E	A	G	F	V	L	P	D	L	V	S	R	X	H	W	G	L	T	Y	Q	L	Q	P	X	X	D	D	E	K	L	A	A	L	Q	R	R	A	A	X	R	G	L	Q	L	P	E	D	V	G	R	F	L	L	N	R	X	A	R	D	L	R	T	L	F	D	V	L	D	R	L	D	K	A	S	X	V	H
Template Known Secondary structure			T	T	T	T	T													S										G	G	G												T	T															T	T	T
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	Q	V	S	T	Q	A	V	S	A	M	L	G	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	R	K	L	T	I	P	F	V	K	E	X	L	R	L
Template Known Secondary structure		T													T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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