Job Description P06710 Confidence 99.87% Date Thu Jan 5 10:59:20 GMT 2012 Rank 47 Aligned Residues 219 % Identity 18% Template c2z4rB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa Resolution 3.05 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		V	L	A	R	K	W	R	P	Q	T	F	A	D	V	V	G	Q	E	.	.	H	V	L	T	A	L	A	N	G	L	S	L	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I
Query Conservation																				.	.
Alig confidence													.	.						.	.																																																												.
Template Conservation													.	.																																																																			.
Template Sequence		P	L	N	P	D	Y	T	F	E	N	F	.	.	V	V	G	P	G	N	S	F	A	Y	H	A	A	L	E	V	A	K	H	P	G	R	Y	N	P	L	F	I	Y	G	G	V	G	L	G	K	T	H	L	L	Q	S	I	G	N	Y	V	V	Q	N	E	P	D	L	R	V	M	Y	I	T	S	E	K	F	L	N	.
Template Known Secondary structure					S	S		S	G	G	G		.	.				T	T	T													S	T	T	T	S								S	S	S	S	S																S	S	S	S													.
Template Predicted Secondary structure													.	.																																																																			.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.																.	.
Query SS confidence																																																			.	.																.	.
Query Sequence		E	Q	G	R	F	V	D	L	I	E	I	D	A	A	S	R	T	K	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	A	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	.	.	S	R	H	S	F	N	A	L	L	K	T	L	E	E	P	.	.	P	E	H	V	K	F	L	L	A	T	T	D
Query Conservation																																																			.	.																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.																.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	V	D	S	M	K	E	G	K	L	N	E	F	R	E	K	Y	R	K	K	V	D	I	L	L	I	D	D	V	Q	F	L	I	G	K	T	G	V	Q	T	E	L	F	H	T	F	N	E	L	H	D	S	G	K	Q	I	V	I	C	S	D	R	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	S										T	T	T		S							G	G	G	G	T	T																	T	T	T								S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		159	160	.	.	.	.							.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.																																																														.	.	.
Query SS confidence								.	.	.	.	.	.																																																														.	.	.
Query Sequence		P	Q	K	L	P	V	.	.	.	.	.	.	T	I	L	S	R	C	L	Q	F	H	L	K	A	L	D	V	E	Q	I	R	H	Q	L	E	H	I	L	N	E	E	H	I	A	H	E	P	R	A	L	Q	L	L	A	R	A	A	E	G	S	L	R	D	A	L	S	L	T	D	Q	A	I	.	.	.	A	S	G	D
Query Conservation								.	.	.	.	.	.																																																														.	.	.
Alig confidence								.	.	.	.	.	.																																																														.	.	.
Template Conservation
Template Sequence		P	Q	K	L	S	E	F	Q	D	R	L	V	S	R	F	Q	M	G	L	V	A	K	L	E	P	P	D	E	E	T	R	K	S	I	A	R	K	M	L	E	I	E	H	G	E	L	P	E	E	V	L	N	F	V	A	E	N	V	D	D	N	L	R	R	L	R	G	A	I	I	K	L	L	V	Y	K	E	T	T	G
Template Known Secondary structure		T	T	T		S	S											S	S																									T					T	T											S																			S	S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	V	S	T	Q	A	V	S	A	M	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	V	D	L	K	E	A	I	L	L	L	K
Template Known Secondary structure		S											T	G
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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