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Job DescriptionP06710
Confidence97.69%DateThu Jan 5 10:59:20 GMT 2012
Rank180Aligned Residues163
% Identity23%Templatec2v3cC_
PDB info PDB header:signaling proteinChain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30... ......40.........50.........60..
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Query Sequence  QEHVLTALANGLS. . . . . . . . . . . . LGRIHHAYLFSGTRGVGKTSIARLLAKGL. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQL
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TTGGGSS
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   63......70.........80.........90.........100.........110.........120.........130....
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Query Sequence  . . . . . . . . NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH
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Template Sequence  AEKIHVPIYGDETRTKSPVDIVKEGMEKFK. . KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIG. . QQ
Template Known Secondary structure  SS



SSS

SSSTTTTS..S
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SSTTSSS

SGGGG..GG
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   151........160.........170.........180 .........190.........200.........210.........220.... ..
 
   135....140.........150.........160.........170... ......180.......
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Query Sequence  SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF. . . . . . . . . . . . . . HLKALDVEQIRHQL
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Template Sequence  AGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRL
Template Known Secondary structure  TTS
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   227..230.........240.........250.........260.........270.........280.........290...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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