Job Description P06710 Confidence 99.76% Date Thu Jan 5 10:59:20 GMT 2012 Rank 73 Aligned Residues 193 % Identity 20% Template c2hcbC_ PDB info PDB header:replication Chain: C: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of amppcp-bound dnaa from aquifex aeolicus Resolution 3.51 Å

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		6	.	.	.	10	.	.	.	.	.	.	.		.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure														.				.	.															.
Query SS confidence														.				.	.															.
Query Sequence		L	A	R	K	W	R	P	Q	T	F	A	D	.	V	V	G	.	.	Q	E	H	V	L	T	A	L	A	N	G	L	S	L	.	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E
Query Conservation														.				.	.															.
Alig confidence							.	.	.					.				.	.															.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	N	P	K	Y	.	.	.	T	L	E	N	F	I	V	G	E	G	N	R	L	A	Y	E	V	V	K	E	A	L	E	N	L	G	S	L	Y	N	P	I	F	I	Y	G	S	V	G	T	G	K	T	H	L	L	Q	A	A	G	N	E	A	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T		.	.	.		S	S	S	S				T	T	T										T	T	T	T	T	T	T	S									S	S	S	S	S															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.				.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.						.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																		.																																			.	.	.	.	.
Query SS confidence																		.																																			.	.	.	.	.
Query Sequence		I	E	Q	G	R	F	V	D	L	I	E	I	D	A	A	S	.	R	T	K	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	A	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	.	.	.	.	.	S	R	H	S	F	N	A	L	L	K	T	L	E	E	P	P	E	H	V	K	F	L	L	A
Query Conservation																		.																																			.	.	.	.	.
Alig confidence		.	.	.	.													.																																			.	.	.	.	.															.
Template Conservation		.	.	.	.																																																																			.
Template Sequence		.	.	.	.	R	G	Y	R	V	I	Y	S	S	A	D	D	F	A	Q	A	M	V	E	H	L	K	K	G	T	I	N	E	F	R	N	M	Y	K	S	V	D	L	L	L	L	D	D	V	Q	F	L	S	G	K	E	R	T	Q	I	E	F	F	H	I	F	N	T	L	Y	L	.	L	E	K	Q	I	I	L	A	S
Template Known Secondary structure		.	.	.	.	T	T																						T											T		S							G	G	G	G	T	T		S																.	T	T
Template Predicted Secondary structure		.	.	.	.																																																																			.
Template SS confidence
						139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.
		156	.	.	.	160	.	.				.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure									.	.	.											.	.
Query SS confidence									.	.	.											.	.
Query Sequence		T	T	D	P	Q	K	L	.	.	.	P	V	T	I	L	S	R	C	L	Q	.	.	F	H	L	K	A	L	D	V	E	Q	I	R	H	Q	L	E	H	I	L	N	E	E	H	I	A	H	E	P	R	A	L	Q	L	L	A	R	A	A	E	G	S	L	R	D	A	L	S	L	T	D	Q	A
Query Conservation									.	.	.											.	.
Alig confidence									.	.	.											.	.																																							.
Template Conservation																																																														.
Template Sequence		D	R	H	P	Q	K	L	D	G	V	S	D	R	L	V	S	R	F	E	G	G	I	L	V	E	I	E	L	D	N	K	T	R	F	K	I	I	K	E	K	L	K	E	F	N	L	E	L	R	K	E	V	I	D	Y	L	L	E	N	T	.	K	N	V	R	E	I	E	G	K	I	K	L	I
Template Known Secondary structure		S	S		G	G	G		T	T	S											S									S														T	T																.		S
Template Predicted Secondary structure																																																														.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions