Job Description P06710 Confidence 99.66% Date Thu Jan 5 10:59:20 GMT 2012 Rank 81 Aligned Residues 193 % Identity 18% Template c2c99A_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:psp operon transcriptional activator; PDBTitle: structural basis of the nucleotide driven conformational2 changes in the aaa domain of transcription activator pspf Resolution 1.9 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		V	V	G	Q	E	H	V	L	T	A	L	A	N	G	L	S	L	.	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I	E	Q	G	R	F	V	D	L	I	E	I	D	A	A
Query Conservation																			.
Alig confidence																			.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	G	E	A	N	S	F	L	E	V	L	E	Q	V	S	H	L	A	P	L	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	I	S	L	N	C	A
Template Known Secondary structure																				T	T	S		S								T	T	S	S											T	S	T	T	T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						G	G
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.																						60	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.													.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																						.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	R	T	K	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	A	.	.	.	.	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	S	R	H	S	F	N	A	L	L	K	T	L	E	E	.	.	.	.	.	.	.	.	.	.	.	.	P	P	E	H	V	K	F	L	L	A	T	T	D	P	Q
Query Conservation																						.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	N	E	N	L	L	D	S	E	L	F	G	H	E	A	K	R	H	P	G	R	F	E	R	A	D	G	G	T	L	F	L	D	E	L	A	T	A	P	M	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A	D	L	P
Template Known Secondary structure		G	S												B					B							T	T	T	S						S	G	G	G	S															S						S	S	S														S	S
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		161	.							.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.									.	.	.	.	.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure				.	.	.	.	.	.																					.	.	.	.	.	.	.	.															.	.	.	.															.
Query SS confidence				.	.	.	.	.	.																					.	.	.	.	.	.	.	.															.	.	.	.															.
Query Sequence		K	L	.	.	.	.	.	.	P	V	T	I	L	S	R	C	L	Q	F	H	L	K	A	L	D	V	E	Q	.	.	.	.	.	.	.	.	I	R	H	Q	L	E	H	I	L	N	E	E	H	I	.	.	.	.	A	H	E	P	R	A	L	Q	L	L	A	R	A	A	.	E	G	S	L	R	D	A	L	S	L	T
Query Conservation				.	.	.	.	.	.																					.	.	.	.	.	.	.	.															.	.	.	.															.
Alig confidence				.	.	.	.	.	.																					.	.	.	.	.	.	.	.															.	.	.	.															.
Template Conservation
Template Sequence		A	M	V	N	E	G	T	F	R	A	D	L	L	D	R	L	A	F	D	V	V	Q	L	P	P	L	R	E	R	E	S	D	I	M	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	L	N	Y	R	W	P	G	N	I	R	E	L	K	N	V	V
Template Known Secondary structure							T	S	S										S								G	G	G	S																			T	T		S	S				B											S			T	T
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		222	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	A	I	A	S	G	D	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	S	V	Y	R	H	G	T	S
Template Known Secondary structure											S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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