Job Description P06710 Confidence 98.41% Date Thu Jan 5 10:59:20 GMT 2012 Rank 121 Aligned Residues 174 % Identity 16% Template c1z6tC_ PDB info PDB header:apoptosis Chain: C: PDB Molecule:apoptotic protease activating factor 1; PDBTitle: structure of the apoptotic protease-activating factor 12 bound to adp Resolution 2.21 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		P	Q	T	F	A	D	V	V	G	Q	E	H	V	L	T	A	L	A	N	G	L	S	L	G	R	I	H	H	.	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I	E	Q	G	R	F	V	D	L
Query Conservation																														.
Alig confidence																														.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Q	R	P	V	V	F	V	T	R	K	K	L	V	N	A	I	Q	Q	K	L	S	K	L	K	G	E	P	G	W	V	T	I	H	G	M	A	G	C	G	K	S	V	L	A	A	E	A	V	R	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	L	E	G	C	F	P	G	G	V
Template Known Secondary structure						S	S																T	T	S	T	T	S										T	T	S	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.																		.	.	.	.	.	.	.	.	180	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																										.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	E	I	D	A	A	S	R	T	K	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	S	R	H	S	F	N	A	L	L	K	T	L	E	E
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.
Template Sequence		H	W	V	S	V	G	K	Q	D	K	S	G	L	L	M	K	L	Q	N	L	C	T	R	L	D	Q	D	E	S	F	S	Q	R	L	P	L	N	I	E	E	A	K	D	R	L	R	I	L	M	L	R	K	H	P	R	S	L	L	I	L	D	D	V	W	D	.	.	.	.	.	.	.	.	.	S	W	V	L	K	A
Template Known Secondary structure								S																		T	T	T			S		S	S				S															T		T	T											.	.	.	.	.	.	.	.	.						T
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.										.	.	250	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	E	H	V	K	F	L	L	A	T	T	D	P	Q	K	L	P	V	T	I	L	S	R	C	L	Q	F	H	L	K	A	L	D	V	E	Q	I	R	H	Q	L	E	H	I	L	N	E	E	H	I	A	H	E	P	R	A	L	Q	L	L	A	R	A	A	E	G
Query Conservation
Alig confidence																																																								.
Template Conservation																																																								.
Template Sequence		F	D	S	Q	C	Q	I	L	L	T	T	R	D	K	S	V	T	D	S	V	M	G	P	K	Y	V	V	P	V	E	S	S	L	G	K	E	K	G	L	E	I	L	S	L	F	V	N	M	K	K	A	D	L	P	.	E	Q	A	H	S	I	I	K	E	C	K	G
Template Known Secondary structure		T		S	S								S		G	G	G	G	T	T			S									S	S															T	S		G	G	G	S		.	T										T	T
Template Predicted Secondary structure																																																								.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions