Job Description P06710 Confidence 100.00% Date Thu Jan 5 10:59:20 GMT 2012 Rank 8 Aligned Residues 305 % Identity 19% Template c1sxjE_ PDB info PDB header:replication Chain: E: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	W	R	P	Q	T	F	A	D	V	V	G	Q	E	H	V	L	T	A	L	A	N	G	L	S	L	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I	E	Q	G	R	F	V
Query Conservation
Alig confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	Y	R	P	K	S	L	N	A	L	S	H	N	E	E	L	T	N	F	L	K	S	L	S	D	Q	P	R	D	L	P	H	L	L	L	Y	G	P	N	G	T	G	K	K	T	R	C	M	A	L	L	E	S	I	F	G	P	G	V	Y	R	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	S	P
Template Known Secondary structure		T	T				S	G	G	G			S										T	T	T	T		T	T										S	T	T	S	S							T						S		T	T						.	.	.	.	.	.	.	.	.	.	.	.	.				S
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.														70	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	I	E	I	D	A	A	S	R	T	K	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	A	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	S	R	H	S	F	N	A	L	L	K	T	L	E	E	P	P	E	H	V	K	F	L	L	A	T	T	D	P	Q	K	L	P	V	T	I	L	S
Query Conservation
Alig confidence										.	.																		.	.
Template Conservation										.	.																		.	.
Template Sequence		Y	H	L	E	I	T	P	S	.	.	N	D	R	I	V	I	Q	E	L	L	K	E	V	A	Q	M	E	.	.	Q	R	Y	K	C	V	I	I	N	E	A	N	S	L	T	K	D	A	Q	A	A	L	R	R	T	M	E	K	Y	S	K	N	I	R	L	I	M	V	C	D	S	M	S	P	I	I	A	P	I	K	S
Template Known Secondary structure		S								.	.														T	T	T	T	.	.											T	T	S	S															S	T	T	T								S		S		S	S						T
Template Predicted Secondary structure										.	.																		.	.
Template SS confidence
		92	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		R	C	L	Q	F	H	L	K	A	L	D	V	E	Q	I	R	H	Q	L	E	H	I	L	N	E	E	H	I	A	H	.	E	P	R	A	L	Q	L	L	A	R	A	A	E	G	S	L	R	D	A	L	S	L	T	D	Q	A	I	A	S	G	D	G	Q	V	S	T	Q	A	V	S	A	M	L	G	T	L	D	D	D
Query Conservation																																.
Alig confidence																																.																									.	.
Template Conservation																																																									.	.
Template Sequence		Q	C	L	L	I	R	C	P	A	P	S	D	S	E	I	S	T	I	L	S	D	V	V	T	N	E	R	I	Q	L	E	T	K	D	I	L	K	R	I	A	Q	A	S	N	G	N	L	R	V	S	L	L	M	L	E	.	.	S	M	A	L	N	N	E	L	A	L	K	S	S	S	P	I	I	K	P	D	W	I	I
Template Known Secondary structure		T	S																									T						S											T	T										T	.	.					T	T	T	T				S	S
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.					.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																				.	.	.	.
Query SS confidence																				.	.	.	.
Query Sequence		Q	A	L	S	L	V	E	A	M	V	E	A	N	G	E	R	V	M	.	.	.	.	A	L	I	N	E	A	A	A	R	G	I	E	W	E	A	L	L	V	E	M	L	G	L	L	H	R	I	A	M	V	Q	L	S	P	A	A	L	G	N	D	M	A	A	I	E	L	R	M	R	E	L	A	R	T	I	P	P	T
Query Conservation																				.	.	.	.
Alig confidence																				.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	H	K	L	T	R	K	I	V	K	E	R	S	V	N	S	L	I	E	C	R	A	V	L	Y	D	L	L	A	H	C	I	P	A	N	I	I	L	K	E	L	T	F	S	L	L	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	L	N	T	T
Template Known Secondary structure															S																T	T	T													T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310																										.	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	Q	L	Y	Y	Q	T	L	L	I	G	R	K	E	L	P	Y	A	P	D	R	R	M	G	V	E	M	T	L	L	R	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	K	S	S	I	I	E	Y	S	S	V	F	D	E	R	L	S	L	G	N	K	A	I	F	H	L	E	G	F	I	A	K	V	M
Template Known Secondary structure																			T		S
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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