Job Description P06710 Confidence 100.00% Date Thu Jan 5 10:59:20 GMT 2012 Rank 6 Aligned Residues 309 % Identity 20% Template c1sxjC_ PDB info PDB header:replication Chain: C: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	V	L	A	R	K	W	R	P	Q	T	F	A	D	V	V	G	Q	E	H	V	L	T	A	L	A	N	G	L	S	L	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I
Query Conservation
Alig confidence																																							.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	P	W	V	E	K	Y	R	P	E	T	L	D	E	V	Y	G	Q	N	E	V	I	T	T	V	R	K	F	V	D	E	G	K	L	P	H	.	L	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	V	A	L	A	R	E	I	Y	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T			S	S	G	G	G			S														T	T					.						S	S	S	S	S														T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		E	Q	G	R	F	V	D	L	I	E	I	D	A	A	S	R	T	K	V	E	D	T	R	D	L	L	D	N	V	.	.	Q	Y	A	P	A	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	S	R	H	S	F	N	A	L	L	K	T	L	E	E	P	P	E	H	V	K	F	L	L	A	T	T	D	P	Q
Query Conservation																															.	.
Alig confidence		.	.																												.	.
Template Conservation		.	.
Template Sequence		.	.	N	Y	S	N	M	V	L	E	L	N	A	S	D	D	R	G	I	D	V	V	R	N	Q	I	K	D	F	A	S	T	R	Q	I	F	S	K	G	F	K	L	I	I	L	D	E	A	D	A	M	T	N	A	A	Q	N	A	L	R	R	V	I	E	R	Y	T	K	N	T	R	F	C	V	L	A	N	Y	A	H
Template Known Secondary structure		.	.	S										T	T	S			S						T								S			S	S	S		S							T	T	G	G	G	S															T	T	T	T								S		G	G
Template Predicted Secondary structure		.	.
Template SS confidence
				74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.					230	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.
Query SS confidence																																																																							.	.	.	.
Query Sequence		K	L	P	V	T	I	L	S	R	C	L	Q	F	H	L	K	A	L	D	V	E	Q	I	R	H	Q	L	E	H	I	L	N	E	E	H	I	A	H	E	P	R	A	L	Q	L	L	A	R	A	A	E	G	S	L	R	D	A	L	S	L	T	D	Q	A	I	A	S	G	D	.	.	.	.	G	Q	V	S	T	Q	A
Query Conservation																																																																							.	.	.	.
Alig confidence																																																																							.	.	.	.
Template Conservation
Template Sequence		K	L	T	P	A	L	L	S	Q	C	T	R	F	R	F	Q	P	L	P	Q	E	A	I	E	R	R	I	A	N	V	L	V	H	E	K	L	K	L	S	P	N	A	E	K	A	L	I	E	L	S	N	G	D	M	R	R	V	L	N	V	L	Q	S	C	K	A	T	L	D	N	P	D	E	D	E	I	S	D	D	V
Template Known Secondary structure		G	S						T	T	S																							T	T	T			B													T	T									T	T	T	T	T	T	T	T		S	S	S				B
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		V	S	A	M	L	G	T	L	D	D	D	Q	A	L	S	L	V	E	A	M	V	E	A	N	G	E	R	V	M	A	L	I	N	E	A	A	A	R	.	G	I	E	W	E	A	L	L	V	E	M	L	G	L	L	H	R	I	A	M	V	Q	L	S	P	A	A	L	G	N	D	M	A	A	I	E	L	R	M	R	E
Query Conservation																																								.
Alig confidence																																								.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	Y	E	C	C	G	A	P	R	P	S	D	L	K	A	V	L	K	S	I	L	E	D	D	W	G	T	A	H	Y	T	L	N	K	V	R	S	A	K	G	L	A	L	I	D	L	I	E	G	I	V	K	I	L	E	D	Y	E	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T																T	S															T	T	T															T	T	S			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	R	T	I	P	P	T	D	I	Q	L	Y	Y	Q	T	L	L	I	G	R	K	E	L	P	Y	A	P	D	R	R	M	G	V	E	M	T	L	L	R	A
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	N	E	E	T	R	V	H	L	L	T	K	L	A	D	I	E	Y	S	I	S	K	G	G	N	D	Q	I	Q	G	S	A	V	I	G	A	I
Template Known Secondary structure		.	.	.	.	.	S																			T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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