Job Description P06710 Confidence 99.82% Date Thu Jan 5 10:59:20 GMT 2012 Rank 65 Aligned Residues 190 % Identity 20% Template c1s3sA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c Resolution 2.90 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.													.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	F	A	D	V	V	G	Q	E	H	V	L	T	A	L	A	N	G	L	S	.	.	.	.	.	.	.	.	.	.	.	.	L	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	Y	D	D	V	G	G	C	R	K	Q	L	A	Q	I	K	E	M	V	E	L	P	L	R	H	P	A	L	F	K	A	I	G	V	K	P	P	R	G	I	L	L	Y	G	P	P	G	T	G	K	T	L	I	A	R	A	V	A	N	E	T	G	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			G	G	G			S																			T	T																		S	T	T	S	S													T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.												.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	E	Q	G	R	F	V	D	L	I	E	I	D	A	A	S	.	.	R	T	K	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	A	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	.	.	.	.	.	.	.	.	.	.	.	S	R	H	S	F	N	A	L	L	K	T	L	E	E	P	P	E
Query Conservation																		.	.																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.									.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	F	F	L	I	N	G	P	E	I	M	S	K	L	A	G	E	S	E	S	N	L	R	K	A	F	E	E	A	E	K	N	A	P	A	I	I	F	I	D	E	L	D	A	I	A	P	K	R	E	K	T	H	G	E	V	E	R	R	I	V	S	Q	L	L	T	L	M	D	G	L	K	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.											T	S		T	T																T		S							T	G	G	G	T				S	S	S				T	T																	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
				149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure		.	.																				.	.				.																																											.
Query SS confidence		.	.																				.	.				.																																											.
Query Sequence		.	.	H	V	K	F	L	L	A	T	T	D	P	Q	K	L	P	V	T	I	L	.	.	S	R	C	.	L	Q	F	H	L	K	A	L	D	V	E	Q	I	R	H	Q	L	E	H	I	L	N	E	E	H	I	A	H	E	P	R	A	L	Q	L	L	A	R	A	A	E	G	.	S	L	R	D	A	L	S	L	T	D
Query Conservation		.	.																				.	.				.																																											.
Alig confidence		.	.																				.	.				.																																.											.
Template Conservation																																																												.
Template Sequence		R	A	H	V	I	V	M	A	A	T	N	R	P	N	S	I	D	P	A	L	R	R	F	G	R	F	D	R	E	V	D	I	G	I	P	D	A	T	G	R	L	E	I	L	Q	I	H	T	K	N	M	K	L	A	D	D	V	D	.	L	E	Q	V	A	N	E	T	H	G	H	V	G	A	D	L	A	A	L	C	S
Template Known Secondary structure		G	G									S		G	G	G	S		G	G	G	T	S	T	T	S	S																					T	T	T	T	S				T	T			.						T	T			S
Template Predicted Secondary structure																																																												.
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.		.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		223	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	I	A	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	A	L	Q	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions