Job Description P06710 Confidence 99.67% Date Thu Jan 5 10:59:20 GMT 2012 Rank 80 Aligned Residues 201 % Identity 16% Template c1ojlF_ PDB info PDB header:response regulator Chain: F: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding Resolution 3.0 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		V	V	G	Q	E	H	V	L	T	A	L	A	N	G	L	S	L	.	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I	E	Q	G	R	F	V	D	L	I	E	I	D	A	A
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		M	I	G	S	S	P	A	M	Q	H	L	L	N	E	I	A	M	V	A	P	S	D	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	L	H	A	C	S	A	R	S	D	R	P	L	V	T	L	N	C	A	A	L	N	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	K
Template Known Secondary structure																					S	T	T									T	T	S	S												S	S		S	S	S								T	T											T				S	S	S
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.													.	.	.	.	150	.	.	.	.	.	.	.							.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Query Sequence		S	R	T	K	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	A	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	S	R	H	S	F	N	A	L	L	K	T	L	E	E	.	.	.	.	.	.	.	.	.	.	.	.	P	P	E	H	V	K	F	L	L	A	T	T	.	.	.	.	.	.	D
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	R	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	R	F	V	E	A	D	G	G	T	L	F	L	D	E	I	G	D	I	S	P	L	M	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	S	N	Q	T	I	S	V	D	V	R	L	I	A	A	T	H	R	D	L	A	E	E	V	S
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	G	G	G	T	T	S							G	G	G															S	S					S	S	S															S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		224	.	.	.														.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.												.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.																													.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.																													.
Query Sequence		P	Q	K	L	P	V	T	I	L	S	R	C	L	Q	F	H	L	K	A	L	D	V	E	Q	.	.	.	.	.	.	.	.	.	.	.	I	R	H	Q	L	E	H	I	L	N	E	E	H	I	A	H	E	P	R	A	L	Q	L	L	A	R	A	A	.	E	G	S	L	R	D	A	L	S	L	T	D	Q	A	I	A
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.																													.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation
Template Sequence		A	G	R	F	R	Q	D	L	Y	Y	R	L	N	V	V	A	I	E	M	P	S	L	R	Q	R	R	E	D	I	P	L	L	A	D	H	F	L	R	R	F	A	E	R	N	R	K	V	V	K	G	F	T	P	Q	A	M	D	L	L	I	H	Y	D	W	P	G	N	I	R	E	L	E	N	A	I	E	R	A	V	V
Template Known Secondary structure			T	S	S										S								G	G	G	G	G	G	G																T	T						B														T	T
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		227	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	D	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	T	G	E
Template Known Secondary structure					S	S
Template Predicted Secondary structure
Template SS confidence
		371	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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