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Job DescriptionP06710
Confidence100.00%DateThu Jan 5 10:59:20 GMT 2012
Rank2Aligned Residues322
% Identity24%Templatec1jr3E_
PDB info PDB header:transferaseChain: E: PDB Molecule:dna polymerase iii, delta' subunit; PDBTitle: crystal structure of the processivity clamp loader gamma2 complex of e. coli dna polymerase iii
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.........40.........50.........60.........70.........80.........90... ...
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Query Sequence  GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI. . . DAA
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Template Sequence  WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGK
Template Known Secondary structure  TTTTTTS


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   6...10.........20.........30.........40.........50.........60.........70.........80.....
 
   97..100.........110.........120.........130.........140.........150.........160.........170......
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Query Sequence  SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK
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Template Sequence  NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLA
Template Known Secondary structure  SSB
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   86...90.........100.........110.........120.........130.........140.........150.........160.....
 
   177..180.........190.........200.........210.........220.........230.........240.........250......
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Query Sequence  ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAM
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Template Sequence  PPPEQYAVTWL. . . . . SREVTMSQDALLAALRLSAGSPGAALALFQGDNWQAR. . . . . . . . . . . . . . . . ETLCQALAYSV
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   166...170...... ...180.........190.........200.........210... ......220....
 
   257..260.........270.........280.........290.........300.........310.........320.........330......
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Query Sequence  VEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGR
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Template Sequence  PSGDWYSLLAAL. . . . . NHEQAPARLHWLATLLMDALKRHHGAAQ. . VTNVDVPGLVAELANHLSPSRLQAILGDVCHIR
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   225....230...... ...240.........250.........260.... .....270.........280.........290.......
 
   337..340. ........350......... 360.........
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Query Sequence  KELPY. . APDRRMGVEMTLLRALAF. HPRMPLPEPE
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Template Sequence  EQLMSVTGINRELLITDLLLRIEHYLQPGVVLPVPH
Template Known Secondary structure  SSTT

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   298.300.........310.........320.........330...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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