Job Description P06710 Confidence 96.90% Date Thu Jan 5 10:59:20 GMT 2012 Rank 313 Aligned Residues 118 % Identity 16% Template c1j8yF_ PDB info PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant Resolution 2.00 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I	E	Q	G	R	F	V	D	L	I	E	I	D	A	A	S	R	T	K	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A
Query Conservation
Alig confidence																.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	K	I	P	Y	V	I	M	L	V	G	V	Q	G	.	.	.	T	T	A	G	K	L	A	Y	F	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	G	F	K	V	G	L	V	G	A	D	V	Y	R	P	A	A	L	E	Q	L	Q	Q	L	G	Q	Q	I	G	V	P
Template Known Secondary structure		S	S	S	S								S			.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T											S	S															T
Template Predicted Secondary structure																.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.																					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		115	.																					.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.			.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.				.	.											.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.				.	.											.
Query Sequence		P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	S	.	.	R	H	S	.	.	F	N	A	L	L	K	T	L	E	E	.	P	P	E	H	V	K	F	L	L	A	T	T	D	P	Q	K	L	P	V	T	I	L	S	R
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.				.	.											.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.				.	.											.
Template Conservation
Template Sequence		V	Y	G	E	P	G	E	K	D	V	V	G	I	A	K	R	G	V	E	K	F	L	S	E	K	M	E	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	A	A	L	L	E	E	M	K	N	I	Y	E	A	I	K	P	D	E	V	T	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	K	F
Template Known Secondary structure						T	T																		T	T		S									S			T	T																			S								G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	Q	F	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	Q	A	S	K	I
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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