Job Description P06710 Confidence 97.43% Date Thu Jan 5 10:59:20 GMT 2012 Rank 219 Aligned Residues 102 % Identity 15% Template c1a1vA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna Resolution 2.20 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I	E	Q	G	R	F	V	D	L	I	E	I	D	A	A	S	R	T	K	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	A	.
Query Conservation																																																																																	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	T	K	V	P	A	A	Y	A	A	Q	G	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	G	V	D	P	N	I
Template Known Secondary structure											T	T	S		T	T	T								T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S																	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.																									.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
																													117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	S	R	H	S	F	N	A	L	L	K	T	L	.	.	.	E	E	P	P	E	H	V	K	F	L	L	A	T	T	D	P	Q	K	L	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation
Template Sequence		R	T	G	V	R	T	I	T	T	G	S	P	I	T	Y	S	T	Y	G	K	F	L	A	D	G	G	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	A	T	S	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	G	S	V	T
Template Known Secondary structure				S	S								S												T	T							S						T	T	T			S														T	T	T	T	T		S							S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions