Email l.a.kelley@imperial.ac.uk Description P36647 Date Thu Jan 5 11:53:28 GMT 2012 Unique Job ID 85d55f9498614bc0

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3sokB_ 99.9 22 PDB header:cell adhesion Chain: B: PDB Molecule:fimbrial protein; PDBTitle: dichelobacter nodosus pilin fima 2 d1oqwa_ 99.9 27 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 3 d2pila_ 99.9 30 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 4 d1qvea_ 99.0 21 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 5 c3jyzA_ 99.0 18 PDB header:structural protein Chain: A: PDB Molecule:type iv pilin structural subunit; PDBTitle: crystal structure of pseudomonas aeruginosa (strain:2 pa110594) typeiv pilin in space group p41212 6 d1x6za1 98.6 17 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 7 c3fu1B_ 93.9 19 PDB header:protein transport Chain: B: PDB Molecule:general secretion pathway protein g; PDBTitle: crystal structure of the major pseudopilin from the type 2 secretion2 system of vibrio cholerae 8 d1t92a_ 93.7 17 Fold:Pili subunits Superfamily:Pili subunits Family:Pseudopilin 9 c2kepA_ 91.9 15 PDB header:transport protein Chain: A: PDB Molecule:general secretion pathway protein g; PDBTitle: solution structure of xcpt, the main component of the type 22 secretion system of pseudomonas aeruginosa 10 c1bttA_ 41.7 31 PDB header:transmembrane protein Chain: A: PDB Molecule:band 3 anion transport protein; PDBTitle: the solution structures of the first and second2 transmembrane-spanning segments of band 3 11 c1btsA_ 41.0 33 PDB header:transmembrane protein Chain: A: PDB Molecule:band 3 anion transport protein; PDBTitle: the solution structures of the first and second2 transmembrane-spanning segments of band 3 12 c4a18U_ 39.6 64 PDB header:ribosome Chain: U: PDB Molecule:rpl13; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1 13 c3u5eL_ 38.5 55 PDB header:ribosome Chain: L: PDB Molecule:60s ribosomal protein l13-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 resolution 14 d3ehbb2 36.4 31 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 15 d1v54b2 29.5 20 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 16 d1fftb2 28.9 13 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 17 c3sojA_ 28.3 17 PDB header:cell adhesion Chain: A: PDB Molecule:pile; PDBTitle: francisella tularensis pilin pile 18 c2kxeA_ 14.7 71 PDB header:transferase Chain: A: PDB Molecule:dna polymerase ii small subunit; PDBTitle: n-terminal domain of the dp1 subunit of an archaeal d-family dna2 polymerase 19 c1afoB_ 14.7 13 PDB header:integral membrane protein Chain: B: PDB Molecule:glycophorin a; PDBTitle: dimeric transmembrane domain of human glycophorin a, nmr,2 20 structures 20 d1r89a1 14.2 62 Fold:PAP/OAS1 substrate-binding domain Superfamily:PAP/OAS1 substrate-binding domain Family:Archaeal tRNA CCA-adding enzyme substrate-binding domain 21 c2wsfG_ not modelled 13.9 25 PDB header:photosynthesis Chain: G: PDB Molecule:photosystem i reaction center subunit v, PDBTitle: improved model of plant photosystem i 22 c1xmeB_ not modelled 13.2 13 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: structure of recombinant cytochrome ba3 oxidase from thermus2 thermophilus 23 c1qleB_ not modelled 13.2 25 PDB header:oxidoreductase/immune system Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment 24 c1ar1B_ not modelled 13.2 25 PDB header:complex (oxidoreductase/antibody) Chain: B: PDB Molecule:cytochrome c oxidase; PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment 25 d3dtub2 not modelled 12.8 25 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 26 c2kadB_ not modelled 11.8 47 PDB header:membrane protein Chain: B: PDB Molecule:transmembrane peptide of matrix protein 2; PDBTitle: magic-angle-spinning solid-state nmr structure of influenza2 a m2 transmembrane domain 27 c2kadC_ not modelled 11.8 47 PDB header:membrane protein Chain: C: PDB Molecule:transmembrane peptide of matrix protein 2; PDBTitle: magic-angle-spinning solid-state nmr structure of influenza2 a m2 transmembrane domain 28 c2kadD_ not modelled 11.8 47 PDB header:membrane protein Chain: D: PDB Molecule:transmembrane peptide of matrix protein 2; PDBTitle: magic-angle-spinning solid-state nmr structure of influenza2 a m2 transmembrane domain 29 c2kadA_ not modelled 11.8 47 PDB header:membrane protein Chain: A: PDB Molecule:transmembrane peptide of matrix protein 2; PDBTitle: magic-angle-spinning solid-state nmr structure of influenza2 a m2 transmembrane domain 30 d1m56d_ not modelled 11.2 21 Fold:Single transmembrane helix Superfamily:Bacterial aa3 type cytochrome c oxidase subunit IV Family:Bacterial aa3 type cytochrome c oxidase subunit IV 31 d1r3jc_ not modelled 10.6 9 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 32 c2o01G_ not modelled 10.2 25 PDB header:photosynthesis Chain: G: PDB Molecule:photosystem i reaction center subunit v, PDBTitle: the structure of a plant photosystem i supercomplex at 3.42 angstrom resolution 33 c2ljcA_ not modelled 10.0 47 PDB header:transport protein/inhibitor Chain: A: PDB Molecule:m2 protein, bm2 protein chimera; PDBTitle: structure of the influenza am2-bm2 chimeric channel bound to2 rimantadine 34 d1oqva_ not modelled 9.7 15 Fold:Pili subunits Superfamily:Pili subunits Family:TcpA-like pilin 35 d1tcra2 not modelled 9.4 29 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 36 c2kb1A_ not modelled 8.1 12 PDB header:membrane protein Chain: A: PDB Molecule:wsk3; PDBTitle: nmr studies of a channel protein without membrane:2 structure and dynamics of water-solubilized kcsa 37 c2wscK_ not modelled 7.0 50 PDB header:photosynthesis Chain: K: PDB Molecule:photosystem i reaction center subunit psak, PDBTitle: improved model of plant photosystem i 38 d1az3a_ not modelled 6.9 38 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoRV 39 c2vvyC_ not modelled 6.6 14 PDB header:viral protein Chain: C: PDB Molecule:protein b15; PDBTitle: structure of vaccinia virus protein b14 40 c1mp6A_ not modelled 6.6 47 PDB header:membrane protein Chain: A: PDB Molecule:matrix protein m2; PDBTitle: structure of the transmembrane region of the m2 protein h+2 channel by solid state nmr spectroscopy 41 c1nyjB_ not modelled 6.6 47 PDB header:viral protein Chain: B: PDB Molecule:matrix protein m2; PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy 42 c2kqtA_ not modelled 6.6 47 PDB header:transport protein Chain: A: PDB Molecule:m2 protein; PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine 43 c2kqtC_ not modelled 6.6 47 PDB header:transport protein Chain: C: PDB Molecule:m2 protein; PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine 44 c1nyjC_ not modelled 6.6 47 PDB header:viral protein Chain: C: PDB Molecule:matrix protein m2; PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy 45 c2kqtB_ not modelled 6.6 47 PDB header:transport protein Chain: B: PDB Molecule:m2 protein; PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine 46 c1nyjD_ not modelled 6.6 47 PDB header:viral protein Chain: D: PDB Molecule:matrix protein m2; PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy 47 c1nyjA_ not modelled 6.6 47 PDB header:viral protein Chain: A: PDB Molecule:matrix protein m2; PDBTitle: the closed state structure of m2 protein h+ channel by2 solid state nmr spectroscopy 48 c2kqtD_ not modelled 6.6 47 PDB header:transport protein Chain: D: PDB Molecule:m2 protein; PDBTitle: solid-state nmr structure of the m2 transmembrane peptide of the2 influenza a virus in dmpc lipid bilayers bound to deuterated3 amantadine 49 c2j7aC_ not modelled 6.4 7 PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome c quinol dehydrogenase nrfh; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 50 c2dcoA_ not modelled 6.4 25 PDB header:membrane protein Chain: A: PDB Molecule:s1p4 first extracellular loop peptidomimetic; PDBTitle: s1p4 first extracellular loop peptidomimetic 51 d2a9ha1 not modelled 6.3 10 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 52 c3lw5K_ not modelled 6.1 26 PDB header:photosynthesis Chain: K: PDB Molecule:photosystem i reaction center subunit x psak; PDBTitle: improved model of plant photosystem i 53 c3f5dA_ not modelled 6.0 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ydea; PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis 54 c1spfA_ not modelled 5.8 25 PDB header:lipoprotein(surface film) Chain: A: PDB Molecule:pulmonary surfactant-associated polypeptide c; PDBTitle: the nmr structure of the pulmonary surfactant-associated2 polypeptide sp-c in an apolar solvent contains a valyl-3 rich alpha-helix 55 c1tiiC_ not modelled 5.7 50 PDB header:enterotoxin Chain: C: PDB Molecule:heat labile enterotoxin type iib; PDBTitle: escherichia coli heat labile enterotoxin type iib 56 d1xmeb2 not modelled 5.5 50 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 57 c1b22A_ not modelled 5.4 20 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: rad51 (n-terminal domain) 58 d1b22a_ not modelled 5.4 20 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 59 d2ab0a1 not modelled 5.3 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI