Job Description P04846 Confidence 99.53% Date Thu Jan 5 10:58:24 GMT 2012 Rank 28 Aligned Residues 203 % Identity 17% Template d1zbma1 SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.30

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		33	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		H	I	K	V	G	V	I	N	G	A	E	Q	.	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	G	F	S	G	S	L	L	P	N	D	A	T	N	H	G	E	L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H	G	Y	K	L	V	A	V	G	N	T	F
Query Conservation														.
Alig confidence														.												.									.
Template Conservation																										.									.
Template Sequence		K	I	R	V	A	H	T	P	D	A	D	D	A	F	X	F	Y	A	X	T	H	G	K	V	.	D	T	W	L	E	I	E	H	.	V	I	E	D	I	E	T	L	N	R	K	A	F	N	A	E	Y	E	V	T	A	I	S	A	H	A	Y	A	L	L	D	D	K	Y	R	I	L	S	A	G	A	S	V	G	D	G
Template Known Secondary structure									S	S												T	T		S	.			S						.												G	G	G	T			S										T	T	S	T	T	T					S	S						S	S
Template Predicted Secondary structure																										.									.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	P	M	A	G	Y	S	K	K	I	K	T	V	A	Q	I	K	E	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I	M	E	L	E	G	A	Q	L	P	R	V
Query Conservation
Alig confidence									.	.	.	.								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	G	P	V	V	V	A	.	.	.	.	K	S	E	I	S	L	D	.	G	K	R	I	A	V	P	G	R	Y	T	T	A	N	L	L	L	K	L	A	V	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	P	V	E	X	P	F	D	R	I	I	Q	A
Template Known Secondary structure									.	.	.	.	S	S					T	.	T						S		T	T	S											S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								G	G	G
Template Predicted Secondary structure									.	.	.	.								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.					.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																									.	.	.	120	.	.	.	.	.	.	.	.	.	130
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220						.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.										.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Query Sequence		L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	S	P	V	H	D	S	V	F	.	.	.	.	.	I	E	D	K	N	S	P	Y	V	N	I	L	V	A	R	E	D	N	K	N	A	E	N	V	K	E	F	L	Q	S	Y	.	.	.	.	.	.	.	.	.	Q	S	P	E	V	A
Query Conservation																															.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	D	E	E	V	D	A	G	L	L	I	H	E	G	Q	I	T	Y	A	D	Y	G	L	K	C	V	L	D	L	W	D	W	W	S	E	Q	V	K	L	P	L	P	L	G	L	N	A	I	R	R	D	L	S	V	E	V	Q	E	E	F	L	R	A	X	R	E	S	I	A	F	A	I	E	N	P	D	E	A	I
Template Known Secondary structure				T	T	S	S	S						S	G	G	G	G	T	G	G	G	G	T													T	T		S	S											T	T	S																						S
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		258	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	A	E	T	I	F	N	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Y	A	X	K	Y	S	R	G
Template Known Secondary structure					G	G	G		T	T
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions