Job Description P04846 Confidence 99.12% Date Thu Jan 5 10:58:24 GMT 2012 Rank 48 Aligned Residues 223 % Identity 14% Template d1xvya_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.74

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																												.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	V	I	N	G	A	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	G	F	S	G	S	L	L	P	N	D	A	T	.	.	.	N	H	G	E	L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H	G	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																												.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	I	Y	N	A	Q	H	E	N	L	V	K	S	W	V	D	G	F	T	K	D	T	G	I	K	V	T	L	R	N	G	G	D	S	E	L	G	N	Q	L	V	Q	E	G	S	A	S	P	A	D	V	F	L	T	E	N	S	P	A	M	V	L	V	D	N	A	K	L	F	A	P	L	D	A	A	T	L	A	Q
Template Known Secondary structure								S																																						G	G	G				S					S	S	S									T	T		B									T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
																102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	K	L	V	A	V	G	N	T	F	V	F	P	M	A	G	Y	S	K	K	I	K	T	V	A	Q	I	K	E	.	.	.	.	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.																										.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		V	E	P	Q	Y	R	P	S	H	G	R	W	I	G	I	A	A	R	S	T	V	F	V	Y	N	P	A	K	L	S	D	A	Q	L	P	K	S	L	L	D	L	A	K	P	E	W	K	G	R	W	A	A	S	P	S	G	A	D	F	Q	A	I	V	S	A	L	L	E	L	K	G	E	.	.	.	.	.	.	.	.
Template Known Secondary structure		B		G	G	G	S		T	T		S	S														T	T	T	S		G	G	G			S	S	G	G	G	G	G	S	G	G	G	T	T	S					T	T	S																	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.									.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.
Query Sequence		L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I	M	E	L	E	G	A	Q	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	S	P	V	H	D	S	V	F	I	.	.	.	.	.	.	.	.	E	D	K	N	S	P	Y	V	N	I	L	V	A	R
Query Conservation																																																												.	.	.	.	.	.	.	.
Alig confidence		.	.																																																									.	.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	K	A	T	L	A	W	L	K	A	M	K	T	N	F	T	A	Y	K	G	N	S	T	V	M	K	A	V	N	A	G	Q	V	D	S	G	V	I	Y	H	Y	Y	P	F	V	D	G	A	K	T	G	E	N	S	N	N	I	K	L	Y	Y	F	K	H	Q	D	P	G	A	F	V	S	I	S	G	G	G	V	L
Template Known Secondary structure		.	.																		S	S											T	S	S	S						T									T	T		T	T	T	T	T								T	T		G	G	G										B
Template Predicted Secondary structure		.	.
Template SS confidence
				156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	N	K	N	A	E	N	V	K	E	F	L	Q	S	Y	Q	S	P	E	V	A	K	A	A	E	T	I	F	N	G	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	S	K	H	Q	Q	Q	A	Q	A	F	I	K	W	I	T	G	K	Q	G	Q	E	I	L	R	T	N	N	A	F	E	Y
Template Known Secondary structure		T	T		T	T													S										S	S	S			B
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions