Job Description P04846 Confidence 98.36% Date Thu Jan 5 10:58:24 GMT 2012 Rank 107 Aligned Residues 239 % Identity 11% Template d1ursa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.45

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		32	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure										.																					.												.	.	.													.																			.	.	.	.	.
Query SS confidence										.																					.												.	.	.													.																			.	.	.	.	.
Query Sequence		K	H	I	K	V	G	V	I	.	N	G	A	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	G	.	L	D	V	E	L	V	G	F	S	G	S	.	.	.	L	L	P	N	D	A	T	N	H	G	E	L	.	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H	.	.	.	.	.
Query Conservation										.																					.												.	.	.													.																			.	.	.	.	.
Alig confidence										.																					.												.	.	.													.																			.	.	.	.	.
Template Conservation
Template Sequence		Q	T	I	T	V	W	S	W	Q	T	G	P	E	L	Q	D	V	K	Q	I	A	A	Q	W	A	K	A	H	G	D	K	V	I	V	V	D	Q	S	S	N	P	K	G	F	Q	F	Y	A	T	A	A	R	T	G	K	G	P	D	V	V	F	G	M	P	H	D	N	N	G	V	F	A	E	E	G	L	M	A	P	V
Template Known Secondary structure									S																														T	T		T	T		T	T								T	T				S							G	G	G							T	T		B
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
																											101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	K	L	V	A	V	G	N	T	F	V	F	P	M	A	G	Y	S	K	K	I	K	T	V	A	Q	I	K	E	.	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Template Conservation
Template Sequence		P	S	G	V	L	N	T	G	L	Y	A	P	N	T	I	D	A	I	K	V	N	G	T	M	Y	S	V	P	V	S	V	Q	V	A	A	I	Y	Y	N	K	K	L	V	P	Q	P	P	Q	T	W	A	E	F	V	K	D	A	N	A	H	G	F	M	Y	D	Q	A	N	L	Y	F	D	Y	A	I	I	G	G	Y	G
Template Known Secondary structure			T	T	S			G	G	G	S							T	T			T	T				S														T	T	T		S	S				S																	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.																.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I	T	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	H	L	Q	I	M	E	L	E	G	A	Q	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	S	P	V	H	D	S	V
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Y	V	F	K	D	N	N	G	T	L	D	P	N	N	I	G	L	D	T	P	G	A	V	Q	A	Y	T	L	M	R	D	M	V	S	K	Y	H	W	M	T	P	S	T	N	G	S	I	A	K	A	E	F	L	A	G	K	I	G	M	Y	V	S	G	P	W	D	T	A	D	I	E	K	A	K	I	D	F	G	V
Template Known Secondary structure									T	T									S	S	S																T	S		S			T	T												T	T			S						G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		220	.	.	.	.	.	.									.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.
Query Sequence		F	I	E	D	K	N	S	.	.	.	.	.	.	.	.	P	Y	V	N	I	L	V	A	R	E	D	N	K	N	A	E	N	V	K	E	F	L	Q	S	Y	Q	S	P	E	V	A	K	A	A	E	T	I	F	N	G	G	A	V	P	G	W
Query Conservation									.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.																																						.	.
Template Conservation																																																						.	.
Template Sequence		T	P	W	P	T	L	P	N	G	K	H	A	T	P	F	L	G	V	I	T	A	F	V	N	K	E	S	K	T	Q	A	A	D	W	S	L	V	Q	A	L	T	S	A	Q	A	Q	Q	M	Y	F	R	D	.	.	S	Q	Q	I	P	A	L
Template Known Secondary structure								T	T	S															B	T	T		S													T	S											.	.						S	S
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.			.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions