Return to main results Retrieve Phyre Job Id

Job DescriptionP04846
Confidence98.69%DateThu Jan 5 10:58:24 GMT 2012
Rank75Aligned Residues211
% Identity11%Templated1sw5a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60....... ..70.........80.........90.........100
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Query Sequence  KHIKVGVINGAEQDVAEVAKKVAKEKYGLDVELVGF. SGSLLPNDATNHGELDANVFQHRPFLEQDNQAH. . . . . . . . . .
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Template Sequence  ERVVIGSKPFNEQYILANMIAILLEENGYKAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYI
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SSTT


TT

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SS

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   6...10.........20.........30.........40.........50.........60.........70.........80.....
 
   101........110.........120. ........130 .........140.........150........
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Query Sequence  . . . . . . . . . . . . GYKLVAVGNTFVFPMAGYSKK. . . . . . IKTVAQIKE. . . . GATVAIPNDPTNLGRALLLLQKEKLITL
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Template Sequence  FDEVKKGLLEADGVVVAAKLGFRDDYALAVRADWAEENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGF. . .
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T

BGGGGTTTGGG

STTST
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   86...90.........100.........110.........120.........130.........140.........150.........160..
 
   159160.........170.........180.........190.........200.........210.........220.........230........
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Query Sequence  KEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDSVFIEDKNSPYVNILVAREDN
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Template Sequence  . . . . . . . . . . . . . . . . . EFKEVKQMEPTLMYEAIKNKQVDVIPAYTTDSRVDLFNLKILEDDKGALPPYDAIIIVNGNTA
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S

GGGTTS
STT
TT
B
TT

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TTGG
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   163......170.........180.........190.........200.........210.........220.....
 
   239240.........250 .........260..
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Query Sequence  KNAENVKEFLQS. . . YQSPEVAKAAET
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Template Sequence  KDEKLISVLKLLEDRIDTDTMRALNYQ
Template Known Secondary structure  G
TTTT


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   226...230.........240.........250..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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