Job Description P04846 Confidence 99.39% Date Thu Jan 5 10:58:24 GMT 2012 Rank 34 Aligned Residues 240 % Identity 11% Template d1sbpa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.70

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.							.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.
Query Sequence		D	A	K	H	I	K	V	G	V	I	N	G	A	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	.	.	.	.	.	.	G	L	D	V	E	L	V	G	F	S	G	S	L	L	P	N	D	A	T	N	H	G	E	L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H	G	Y	K
Query Conservation																															.	.	.	.	.	.
Alig confidence									.																						.	.	.	.	.	.
Template Conservation									.
Template Sequence		K	D	I	Q	L	L	N	.	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	E	T	G	D	N	V	V	I	D	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	T	V	T	L	A	L	A	Y	D	V	N	A	I	A	E	R	G	R	I	D
Template Known Secondary structure									.				S	T	T																				S										S											T	T				S					S	S										T	T	S	S
Template Predicted Secondary structure									.
Template SS confidence
		1	.	.	.	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		104												.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.																											.
Query Sequence		L	.	.	.	.	.	.	.	.	.	.	.	V	A	V	G	N	T	F	V	F	P	M	A	G	Y	S	K	K	I	K	T	V	A	Q	I	K	E	.	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G	K	G	L	L	P	T	A	L	D	I
Query Conservation			.	.	.	.	.	.	.	.	.	.	.																											.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation
Template Sequence		K	N	W	I	K	R	L	P	D	D	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D	Q	A	K	A	E	D	F	V
Template Known Secondary structure		T	T	G	G	G	G	S						S			B								T	T		T	T				S	G	G	G	G	G	S	T	T								T	T	T																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.					.	.	.	.	240	.	.	.	.
Predicted Secondary structure																		.																													.	.																					.	.	.	.
Query SS confidence																		.																													.	.																					.	.	.	.
Query Sequence		T	D	N	P	R	H	L	Q	I	M	E	L	E	G	A	Q	.	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	Q	T	G	L	S	P	V	.	.	H	D	S	V	F	I	E	D	K	N	S	P	Y	V	N	I	L	V	A	R	.	.	.	.	E	D	N	K	N	A	E	N	V
Query Conservation																		.																													.	.																					.	.	.	.
Alig confidence																		.																													.	.																					.	.	.	.
Template Conservation
Template Sequence		K	A	L	F	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	T	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	D	T	K	A	V	A
Template Known Secondary structure							T						S	S										T	S				S															T	T	T	T	T	T							S					B															T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	F	L	Q	S	Y	Q	S	P	E	V	A	K	A	A	E	T	I	F	N	G	G	A	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	F	Y	R	P	R	D	A
Template Known Secondary structure							G	G	G	S										T	T				S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions