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Job DescriptionP04846
Confidence99.18%DateThu Jan 5 10:58:24 GMT 2012
Rank45Aligned Residues217
% Identity21%Templated1r9la_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.59

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60.........70.........80.........90. ........100...
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Query Sequence  SSDAKHIKVGVINGAEQDVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRP. . . . FLEQDNQAHGYK
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Template Sequence  PGKGITVNPVQSTITEETFQTLLVSRALEKLGYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFY
Template Known Secondary structure  TTTT


S
GGGTT





TSS
TTTTTGGGT
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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   104. ....110.........120......... 130.........140.........150.........160...
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Query Sequence  LV. . . . . . AVGNTFVFPMAGYSKKIKTVAQIK. . . . . . . . . . . . . . EGATVAIPNDPTNLGRALLLLQKEKLITLKEGKG
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Template Sequence  REGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYEL. . . . . . . .
Template Known Secondary structure 
S
ST

BGGGGGSGGG
SSSSSS


TTSTT
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   84.....90.........100.........110.........120.........130.........140.........150.....
 
   164.....170.........180...... ...190.........200.........210.........220......
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Query Sequence  LLPTALDITDNPRHLQIMELEGA. . . . QLPRVLDDPKVDVAIISTTYIQQTGLSPVHDSVFIEDKNS. . . . . . . . . . . . .
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Template Sequence  . . . . . . . . . . . TNTVTHNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTKLP
Template Known Secondary structure  ...........TTT
S
TT


SSSS
BTTT
B
SS


TT
TT


B
T
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   156...160.........170.........180.........190.........200.........210.........220....
 
   227..230....... ..240.........250.........260...
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Query Sequence  . . . . . . . . PYVNILVARED. . NKNAENVKEFLQSYQSPEVAKAAETI
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Template Conservation         
   
  
         
 
   
    
       
   
Template Sequence  NGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAI
Template Known Secondary structure  TS
B
SS
S




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   225....230.........240.........250.........260.........270.
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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