Job Description P04846 Confidence 98.25% Date Thu Jan 5 10:58:24 GMT 2012 Rank 117 Aligned Residues 225 % Identity 8% Template d1mqia_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.35

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		31	.	.	.	.	.	.	.	.	40	.	.																		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.													.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	K	H	I	K	V	G	V	I	N	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	D	V	A	E	V	A	K	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	G	F	S	.	.	.	.	.	.	.	.	.	.	.	.	G	S	L	L	P	N	D	A	T	N	H	G	E
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	K	T	V	V	V	T	T	I	L	E	S	P	Y	V	M	M	K	K	N	H	E	M	L	E	G	N	E	R	Y	E	G	Y	C	V	D	L	A	A	E	I	A	K	H	C	G	F	K	Y	K	L	T	I	V	G	D	G	K	Y	G	A	R	D	A	D	T	K	I	W	N	G	M	V	G	E	L	V	Y	G	K
Template Known Secondary structure												B	T	T	T	B				T	T	G	G	G			G	G	G	G			S														T									T	T						B		T	T	T			B									T	T	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	A	N	V	F	Q	H	R	P	F	L	E	Q	D	N	Q	A	H	G	Y	K	L	V	A	V	G	N	T	F	V	F	P	M	A	G	Y	S	K	K	I	K	T	V	A	Q	I	K	E	G	A	T	V	A	I	P	N	D	P	T	N	L	G	R	A	L	L	L	L	Q	K	E	K	L	I	T	L	K	E	G
Query Conservation
Alig confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	I	A	I	A	P	L	T	I	T	L	V	R	E	E	V	I	D	F	S	K	P	F	M	S	L	G	I	S	I	M	I	K	K	G	T	P	I	E	S	A	E	D	L	S	K	Q	T	E	I	A	Y	G	T	L	D	S	G	S	T	K	E	F	F	R	R	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Known Secondary structure			S				S	S		B							T	T					S		S											T	T		S			S						T		S	S	S					B	S	S	S									.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.													150
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		K	G	L	L	P	T	A	L	D	I	T	D	N	P	R	H	L	Q	I	M	E	L	E	G	A	Q	L	P	R	V	L	D	D	P	K	V	D	V	A	I	I	S	T	T	Y	I	Q	.	Q	T	G	L	S	P	V	H	D	S	V	F	I	E	D	K	N	S	P	Y	V	N	I	L	V	A	R	E	D	N	K	N
Query Conservation																																																	.
Alig confidence																																																	.
Template Conservation
Template Sequence		K	I	A	V	F	D	K	M	W	T	Y	M	R	S	A	E	P	S	V	F	V	R	T	T	A	E	G	V	A	R	V	R	K	S	K	G	K	Y	A	Y	L	L	E	S	T	M	N	E	Y	I	E	Q	R	K	P	C	D	T	M	K	V	G	G	N	L	D	S	K	G	Y	G	I	A	T	P	K	G	S	S	L
Template Known Secondary structure			S														S	S				B	S	S											T	T	T	S														T	T	S	T	T							S			S											T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		241	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		A	E	N	V	K	E	F	L	Q	S	Y	Q	S	P	.	E	V	A	K	A	A	E	T	I	F	N	G	G
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence		G	N	A	V	N	L	A	V	L	K	L	N	E	Q	G	L	L	D	K	L	K	N	K	W	W	Y	D	K
Template Known Secondary structure															T	T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions