 |
Job Description | P04846 | Confidence | 89.92% | Date | Thu Jan 5 10:58:24 GMT 2012 |
Rank | 197 | Aligned Residues | 115 |
% Identity | 10% | Template | d1jw1a1 |
SCOP info | Periplasmic binding protein-like II
| Periplasmic binding protein-like II
| Transferrin
|
Resolution | 4.00 |
|
 |
  |   |
29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | |
|
|
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
Query Sequence |   |
S | D | A | K | H | I | K | V | G | V | I | N | G | A | E | Q | D | V | A | E | V | A | K | K | V | A | K | E | K | Y | G | L | D | V | E | L | V | G | F | S | G | S | L | L | P | N | D | A | T | N | H | G | E | L | D | A | N | V | F | Q | H | R | P | F | L | E | Q | D | N | Q | A | H | G | Y | K | L | V | . |
. |
. |
Query Conservation |   |
  |   |   |   |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
Template Conservation |   |
|
|   |   |   |
|
|
|
|
|   |
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |
|   |   |   |
|
|   |   |
|   |   |
|   |
|
|   |   |   |
|
|   |   |   |   |
|   |
|   |   |   |   |   |   |
|   |
|
|   |   |
|
Template Sequence |   |
A | P | R | K | N | V | R | W | C | A | I | S | L | P | E | W | S | K | C | Y | Q | W | Q | R | R | M | R | K | L | G | A | P | S | I | T | C | V | R | R | T | S | V | L | E | C | I | R | A | I | A | G | K | N | A | D | A | V | T | L | D | D | G | M | V | F | E | A | G | R | D | P | Y | K | L | R | P | V | A | A | E |
Template Known Secondary structure |   |
| T | T | S | S |
|  |  |  |  | S | S | S | T | T | T | S | S |  |  |  |  |  |  |  |  |  |  |  | S | S | S |
|
|  |  |  |  |
|
| S | T | T | T | T | T |  |  |  |  | T | T | S | S |
|
|
|  |  |
| S | T | T | T | T | T | T | T | S | S | S | S |
|  |  |  |
|
|
|  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
|
|
|
|
|
|
106 | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
A | V | G | N | T | F | V | F | P | M | A | G | Y | S | K | K | I | K | T | V | A | Q | I | K | E | G | A | T | V | A | I | P | N | D | P | T | N | L |
Query Conservation |   |
. | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
. | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|
|
|   |
|   |   |   |
|   |
|
|
|
|
|
|
|
|
|   |
|   |   |   |
|
|
|
Template Sequence |   |
I | Y | G | T | E | K | S | P | Q | T | H | Y | Y | A | V | A | V | V | K | K | G | S | N | F | K | L | D | Q | L | Q | G | Q | K | S | C | H | M | G | L | G | R | S | A | G |
Template Known Secondary structure |   |
 |  |  |  | T | T |  |  |  | S |  |  |
|
|
|
|
|
|
| T | T |
|
|
|
| G | G | G |
| S |  |  |  |
|
| B | S |
| S | S |
|
|
|
|
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|