Return to main results Retrieve Phyre Job Id

Job DescriptionP04846
Confidence89.92%DateThu Jan 5 10:58:24 GMT 2012
Rank197Aligned Residues115
% Identity10%Templated1jw1a1
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Transferrin
Resolution4.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50.........60.........70.........80.........90.........100.....
Predicted Secondary structure 


























...
Query SS confidence 












































































. . .
Query Sequence  SDAKHIKVGVINGAEQDVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRPFLEQDNQAHGYKLV. . .
Query Conservation       
 

                  
  
  
              
  
  
                      ...
Alig confidence 












































































...
Template Conservation 

   




 
  
  

  
         
   

   
   

  
  
 

   

    
 
      
 

  
Template Sequence  APRKNVRWCAISLPEWSKCYQWQRRMRKLGAPSITCVRRTSVLECIRAIAGKNADAVTLDDGMVFEAGRDPYKLRPVAAE
Template Known Secondary structure 
TTSS
SSSTTTSSSSS



STTTTTTTSS



STTTTTTTSSSS



Template Predicted Secondary structure 




























Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   106...110.........120.........130.........140...
Predicted Secondary structure  ......
















Query SS confidence  . . . . . .





































Query Sequence  . . . . . . AVGNTFVFPMAGYSKKIKTVAQIKEGATVAIPNDPTNL
Query Conservation  ......                     

  

           
Alig confidence  ......





































Template Conservation   
         
  





 
   
 








 
   


Template Sequence  IYGTEKSPQTHYYAVAVVKKGSNFKLDQLQGQKSCHMGLGRSAG
Template Known Secondary structure  TTS






TT



GGG
S

BS
SS



Template Predicted Secondary structure 
























Template SS confidence 











































   81........90.........100.........110.........120....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions