Return to main results Retrieve Phyre Job Id

Job DescriptionP04846
Confidence97.30%DateThu Jan 5 10:58:24 GMT 2012
Rank156Aligned Residues241
% Identity16%Templated1eu8a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.... .....50........ .60.........70.. .......80. ........90.........100
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Query Sequence  DAKHIKVGVINGAEQ. DVAEVAKKVAKEKY. GLDVELVGFSGSLL. . . . . . PNDATNHGE. LDANVFQHRPFLEQDNQAH
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Template Sequence  EEGKIVFAVGGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKSSDPDVFLMDVAWLGQFIASGW
Template Known Secondary structure 
SS

SSTT


SSTTT
SSTTTT
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   101... .....110......... 120.........130
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Query Sequence  GYKL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VAVGNTFVFPMAGYS. . . . . . . . KKIKTVAQIKE. . . . . . . . . . .
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Template Sequence  LEPLDDYVQKDNYDLSVFFQSVINLADKQGGKLYALPVYIDAGLLYYRKDLLEKYGYSKPPETWQELVEMAQKIQSGERE
Template Known Secondary structure  B

ST

GGGB
TTT


TT

S

SBTT
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   131........140.........150.........160...... ...170.........180........
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Query Sequence  . . . . . . GATVAIPNDPTNLGRALLLLQKEKLITLKEGKGLLP. . . . . . . . . . . . . . . . TALDITDNPRHLQIMELEGAQL
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Template Conservation                               
                       
     
   
                
Template Sequence  TNPNFWGFVWQGKQYEGLVCDFVEYVYSNGGSLGEFKDGKWVPTLNKPENVEALQFMVDLIHKYKISPPNTYTEMTEEPV
Template Known Secondary structure  T
TT



SSSTTT

STT
TT
TS

S
GGGGTT

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   163......170.........180.........190.........200.........210.........220.........230.........240..
 
   189190.........200.........210.........220. ........230.........240.........250.......
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Query Sequence  PRVLDDPKVDVAIISTTYIQQTGLSPVHDSVFI. . . . . . . . . . . EDKNSPYVNILVAREDNKNAENVKEFLQSYQSPEVA
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Template Sequence  RLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKALAWEFVKFVESYSVQ
Template Known Secondary structure  TT

TTSTT
TTTT



B
TTS



BBTT
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   243......250.........260.........270.........280.........290.........300.........310.........320..
 
   258.260.........270..
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Query Sequence  KAAETIFNGGAVPGW
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Template Sequence  KGFAMN. . LGWNPGR
Template Known Secondary structure  ..T


BSB
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   323..... .330.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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